Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02731 ATGGGAGACATCCCCACATTCTTGATAATAATATTAGATGCAAGAAGGTATAAGAACAGCTTCAAAAGCTCGGGAGAAACTATGGCATCATCAAGCTCATACAATTCACCATGTGCAGCCTGCAAATTCCTTCGTCGAAAATGCATGCCAGGTTGCATTTTCGCGCCATACTTTCCACCAGAAGAGCCGCAAAAATTCGCAAACGTTCACAAGATCTTTGGCGCAAGCAACGTGACAAAGATCCTCAACGAACTCCTCCCTCACCAGAGAGAAGATGCAGTGAATTCACTTGCTTATGAAGCGGAAGCGCGCGTGAGGGATCCGGTTTACGGATGTGTTGGTGCTATCTCTTTCCTTCAGAGACAAGTTCAAAGGCTTCAAAAAGAACTCGATTCTGCTAACGCTGATCTTCTTCGCTTTGCTTACAGTGATTCATCTCTTCCACCTCTTCCTCCTCTTGTTGTTCCGGCTTCATTTCATCATCATCATCATCATCAACAATTAACACCTCAGAGACAATTACAATTTAGTTCAAGATTTGGTAATGGTGGTAATGTTGATGCAAGTGGTTTTTACTCTTTTCCTTATGCTATTCCATGGAATGATACCTCTTCTGATGATTTAAGTGGAGGTGTAGGAGGAAGAGGAGGAGGTGTATGA 660 0.4303 MGDIPTFLIIILDARRYKNSFKSSGETMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKILNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRFAYSDSSLPPLPPLVVPASFHHHHHHQQLTPQRQLQFSSRFGNGGNVDASGFYSFPYAIPWNDTSSDDLSGGVGGRGGGV 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02731 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 35 166 - -
Trre5g02731 219 Coils Coil 116 136 - -
Trre5g02731 219 ProSiteProfiles LOB domain profile. 36 137 IPR004883 -
Trre5g02731 219 Pfam Lateral organ boundaries (LOB) domain 37 134 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02731 Trre-Chr5 21738094 21740182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02731 28 146 AS2 family AT5G63090 89.167 2.70e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre5g02731 LOB 4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02731 - - gmx:100803667 270.396