Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02719 ATGGCTTTGAACATAAAGGGGCAAATAGAGAAGGTGAATGGTAAAGAACTAAGTTACAGTGAATTTGTTGAAAGATATATGGAGAAGAACAAACCAGTAATTCTCACTGGACTAATGGACCATCATTGGAAAGCTTCCACTGATTGGGTCACCCCTAAGTCTCAACCTAATTTTCAATTTTTTTCCAATCATTTTGGTTCCTCCAAAGTTCAGGTTGCAGATTGTGATACTAGAGATTTTGGTGATCAAAAGAGGGAGGAAATGTTGGTCTCTGATTTCGTAGGACGTTGCCTTCAGATTGAGGGTTCTGCAGTTCCATGCAGTAATGAAAATGGTATAAGTAATGGTGATTCTTTATCTGTACCTTATTTGAAGGATTGGCATTTTGTGAAGGAATATCCCGATTATGTAGCATACATCACTCCGATGTTCTTTTGTGATGATTGGCTCAACTTGTATCTCGACAACTTCAGAATGAATACCTATTCTGACAATTCCCAGCAAAATACAGAAATTTGTTGCGCTGACTATCGTTTTGTTTACATGGGAATTAAAGGATCTTGGACTCCTCTACATGCTGATGTTTTCAGGTCGTATAGCTGGTCAGCAAATGTATGTGGAAAGAAGAGATGGTTTTTTCTAGATCCTTCCCAACACCATCTTGTGTTTGACAGGAATGTGAAAAACTGTGTATATAATATCTTTGATGAAGTATCTGATTCAAAATATCCCGGTTTTAAAAAGGCTATCTGGTTAGAGTGCACACAAGAAGCAGGGGAAATCATATTTGTTCCCAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAATTGGTTCAATTCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGCGACTACAATGAGGCCAAGGAATACATTGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTCACATTCATTTCATACTTCTCCTTGGCCAACTTGGTGCTGCTCTGCTACATAAACGGAAAAGATGGAAGTACTACTGGAAGTTCGTCAAGAATAGCTCAACATTTATATTTGAATATTGGGTCTATTAGGAGGGTCGCATCAGAGATGAAAAACTTGCATGCTCTAGAAGGGAATCATGATTGCATTGTGAATATGATCAAAACATTTGAAGATCCTAGGTTTTCCAAATTCTGCATACAAGTGGGAAAAACATATTTAACAATACATGAACAATCCAATTTGTTCTCTGATTTTGAGAGTGCTTCAACGGTTGAGTTGGAGGACCTCTGTGTTTTTAAAGCGCACACTTCTTCCCAGGTTTACACACCAGAAGACCTCATCAAATTTATAGACACTGCTGTTGCAGAACTGGGCGACATTTTCATCGAGTCGTCTGTACTGCGTGTTGCTTGA 1470 0.383 MALNIKGQIEKVNGKELSYSEFVERYMEKNKPVILTGLMDHHWKASTDWVTPKSQPNFQFFSNHFGSSKVQVADCDTRDFGDQKREEMLVSDFVGRCLQIEGSAVPCSNENGISNGDSLSVPYLKDWHFVKEYPDYVAYITPMFFCDDWLNLYLDNFRMNTYSDNSQQNTEICCADYRFVYMGIKGSWTPLHADVFRSYSWSANVCGKKRWFFLDPSQHHLVFDRNVKNCVYNIFDEVSDSKYPGFKKAIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNSYNLSWVWNLLLSDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFISYFSLANLVLLCYINGKDGSTTGSSSRIAQHLYLNIGSIRRVASEMKNLHALEGNHDCIVNMIKTFEDPRFSKFCIQVGKTYLTIHEQSNLFSDFESASTVELEDLCVFKAHTSSQVYTPEDLIKFIDTAVAELGDIFIESSVLRVA 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02719 489 Pfam Cupin-like domain 21 287 IPR041667 -
Trre5g02719 489 SUPERFAMILY Clavaminate synthase-like 4 308 - -
Trre5g02719 489 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 10 339 - -
Trre5g02719 489 ProSiteProfiles JmjC domain profile. 147 302 IPR003347 -
Trre5g02719 489 SMART cupin_9 122 302 IPR003347 -
Trre5g02719 489 Gene3D Cupin 2 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02719 Trre-Chr5 21610139 21614095 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02719 7 294 Glycosyltransferase AT1G78280 24.497 6.09e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre5g02719 Cupin_8 1e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02719 - - gmx:100803814 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02719 5 21610139 21614095 Trre5g02719 5 21610139 21614095 ECH