Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02718 ATGGCTTTGAACATAAAGGGGCAAATAGAGAAGGTGAATGGTAAAGAACTAAGTTACAGTGAATTTGTTGAAAGATATATGGAGAAGAACAAACCAGTAATTCTCACTGGACTAATGGACCATCATTGGAAAGCTTCCACTGATTGGGTCACCCCTAAGTCTCAACCTAATTTTCAATTTTTTTCCAATCATTTTGGTTCCTCCAAAGTTCAGGTTGCAGATTGTGATACTAGAGATTTTGGTGATCAAAAGAGGGAGGAAATGTTGGTCTCTGATTTCGTAGGACGTTGCCTTCAGATTGAGGGTTCTGCAGTTCCATGCAGTAATGAAAATGGTATAAGTAATGGTGATTCTTTATCTGTACCTTATTTGAAGGATTGGCATTTTGTGAAGGAATATCCCGATTATGTAGCATACATCACTCCGATGTTCTTTTGTGATGATTGGCTCAACTTGTATCTCGACAACTTCAGAATGAATACCTATTCTGACAATTCCCAGCAAAATACAGAAATTTGTTGCGCTGACTATCGTTTTGTTTACATGGGAATTAAAGGATCTTGGACTCCTCTACATGCTGATGTTTTCAGGTCGTATAGCTGGTCAGCAAATGTATGTGGAAAGAAGAGATGGAATGTGAAAAACTGTGTATATAATATCTTTGATGAAGTATCTGATTCAAAATATCCCGGTTTTAAAAAGGCTATCTGGTTAGAGTGCACACAAGAAGCAGGGGAAATCATATTTGTTCCCAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAATTGGTTCAATTCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGCGACTACAATGAGGCCAAGGAATACATTGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTCACATTCATTTCATACTTCTCCTTGGCCAACTTGGTGCTGCTCTGCTACATAAACGGAAAAGATGGAAGTACTACTGGAAGTTCGTCAAGAATAGCTCAACATTTATATTTGAATATTGGGTCTATTAGGAGGGTCGCATCAGAGATGAAAAACTTGCATGCTCTAGAAGGGAATCATGATTGCATTGTGAATATGATCAAAACATTTGAAGATCCTAGGTTTTCCAAATTCTGCATACAAGTGGGAAAAACATATTTAACAATACATGAACAATCCAATTTGTTCTCTGATTTTGAGAGTGCTTCAACGGTTGAGTTGGAGGACCTCTGTGTTTTTAAAGCGCACACTTCTTCCCAGGTTTACACACCAGAAGACCTCATCAAATTTATAGACACTGCTGTTGCAGAACTGGGCGACATTTTCATCGAGTCGTCTGTACTGCGTGTTGCTTGA 1428 0.3824 MALNIKGQIEKVNGKELSYSEFVERYMEKNKPVILTGLMDHHWKASTDWVTPKSQPNFQFFSNHFGSSKVQVADCDTRDFGDQKREEMLVSDFVGRCLQIEGSAVPCSNENGISNGDSLSVPYLKDWHFVKEYPDYVAYITPMFFCDDWLNLYLDNFRMNTYSDNSQQNTEICCADYRFVYMGIKGSWTPLHADVFRSYSWSANVCGKKRWNVKNCVYNIFDEVSDSKYPGFKKAIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNSYNLSWVWNLLLSDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFISYFSLANLVLLCYINGKDGSTTGSSSRIAQHLYLNIGSIRRVASEMKNLHALEGNHDCIVNMIKTFEDPRFSKFCIQVGKTYLTIHEQSNLFSDFESASTVELEDLCVFKAHTSSQVYTPEDLIKFIDTAVAELGDIFIESSVLRVA 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02718 475 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 10 325 - -
Trre5g02718 475 ProSiteProfiles JmjC domain profile. 147 288 IPR003347 -
Trre5g02718 475 Pfam Cupin-like domain 21 273 IPR041667 -
Trre5g02718 475 Gene3D Cupin 2 273 - -
Trre5g02718 475 SUPERFAMILY Clavaminate synthase-like 4 294 - -
Trre5g02718 475 SMART cupin_9 122 288 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02718 Trre-Chr5 21610139 21614095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02718 7 280 Glycosyltransferase AT1G78280 22.635 4.60e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre5g02718 Cupin_8 7.9e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02718 - - gmx:100803814 776.163