Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02702 ATGCAGACTACTGCTTTCACTCTCTCCCCTTCTCCCCCTCTCCGTCACAACAACAACCTCAACCGTTTTAACCGTTCTCTTAATCTCCGTCTCTCCGCCAAATCAAACGACGCCGTTAATCCAAATGCCTCTTCTTCTTCTTCATTCACTCGTCAATCATGGTCCCTTTCTCCTTCCTCTTCTTTCAAATTCAGACCTCAACCTCTCCTTTCTTCCGACTCCTTCGATCTTTCTCCTCCTAAAGCCACTTCTGAAAGCGCCGGTGAATCCGCCGCCGATTCTAGTTCCTTACTCAAAACTCTTCAACTTGGTTCCTTGTTTGGTTTATGGTACCTCTTTAACATCTACTTCAATATCTACAACAAACAGGTTTTGAAAGCATTGCATTTCCCTGTAACTGTAACTGTAGTTCAATTTGCTGTTGGAACTGTTCTTGTTAGTGTTATGTGGGCTCTTAATCTATACAAGAGACCTAAAATTACTGGTGCCATGCTTGCAGCGATATTTCCACTCGCGGTGGTGCACACTTTGGGGAATCTTTTCACTAATATGAGTCTTGGAAAGGTGGCTGTGTCCTTTACGCACACTATTAAAGCTATGGAGCCTTTCTTTTCTGTCATCCTTTCTGCCATGTTCCTTGGAGAGATGCCTACCCCTTGGGTGGTTGGTTCCCTCCTGCCTATTGTTGGTGGAGTTGCACTGGCGTCTGTTACTGAGGCCTCTTTCAATTGGGCTGGATTTTGGAGTGCAATGGCTTCCAATGTGACAAACCAATCGCGTAATGTTCTTAGCAAAAAGGTCATGGTTAAGCAAGAGGAATCCTTGGACAACATAACTCTCTTCTCTATAATAACAATAATGTCCTTCTTCTTGTTAGCACCCGCGGCTATCTTCATGGAGGGTGTCAAATTTACCCCTGCTTACCTGGAATCTGTTGGCTTAAATGTTAGGCAAGTGTACACCAGATCTCTTCTTGCTGCACTCTGTTTTCATGCATATCAGCAAGTTTCTTACATGATATTGCAGAGGGTATCACCTGTTACCCATTCTGTTGGTAACTGTGTGAAGCGTGTTGTGGTCATTGTGAGCTCTGTTATCATCTTCAAAACAGCTGTCTCTCCCTTGAATGCTGCTGGTACCGCTATAGCTCTTGCTGGTGTTTTCCTCTATTCAAGGGTGAAGCGAATTAAGTCAAAACCAAAGACAGCTTAG 1212 0.4414 MQTTAFTLSPSPPLRHNNNLNRFNRSLNLRLSAKSNDAVNPNASSSSSFTRQSWSLSPSSSFKFRPQPLLSSDSFDLSPPKATSESAGESAADSSSLLKTLQLGSLFGLWYLFNIYFNIYNKQVLKALHFPVTVTVVQFAVGTVLVSVMWALNLYKRPKITGAMLAAIFPLAVVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVILSAMFLGEMPTPWVVGSLLPIVGGVALASVTEASFNWAGFWSAMASNVTNQSRNVLSKKVMVKQEESLDNITLFSIITIMSFFLLAPAAIFMEGVKFTPAYLESVGLNVRQVYTRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIIFKTAVSPLNAAGTAIALAGVFLYSRVKRIKSKPKTA 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02702 403 SUPERFAMILY Multidrug resistance efflux transporter EmrE 145 237 - -
Trre5g02702 403 Pfam Triose-phosphate Transporter family 101 391 IPR004853 -
Trre5g02702 403 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 101 401 IPR004696 GO:0016020|GO:0022857|GO:0055085
Trre5g02702 403 PANTHER SOLUTE CARRIER FAMILY 35 102 397 - -
Trre5g02702 403 SUPERFAMILY Multidrug resistance efflux transporter EmrE 290 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02702 Trre-Chr5 21423477 21426490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02702 1 403 Antiporters AT5G33320 68.932 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02702 K15283 - gmx:100804563 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02876 15 24992649 24995327 Trre5g02702 5 21423477 21426490 ECH
Trre5g02702 5 21423477 21426490 Trre5g02702 5 21423477 21426490 ECH
Trre15g02876 15 24992649 24995327 Trre5g02702 5 21423477 21426490 PCT