Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02700 ATGGATCTTGAGACAAAGCTTACAAAAAATTACTACTTCAAATCCAACATGAAAAATCATGAGAATAATCCATTTGGTGGGGTTCCTTCATCTCAAGGAATCTTACAAGATTTTAATCACATTGATAAATTTAATGTCAATGGTTCATTTTTCAATCCTATTTCCGGGGTCCAAAATTTTGCACCTAGTTATAATTTTACCTATGATGTTCATCATGATTTCAAGCCTTTTGTGGAGAATAATAGTAGTAATAATGGTAATGCTTATGTAATGGATAATTTCCTATATGGAAATTATGGCTTGAACAATCTTTCTCAAAGGAATAATCAAGTGGAAATTATGGTTACTAATACTAACCAAAGTAATTATTTTCCCTTTAATATTTCTCAAGAAACCAAGCCTTTGAATTTTGGTGTACCAGATGAAGTTTCATGCATTTCACCACTGAATTATTACAAAAGAATTAACATGAACAAAAATAATAAGGGATATCTTACCTCAAGAAAGACACAAAAAGTTCGTAAGAGGTCCAATGTTGTGAAAGGGCAATGGACGGTAGCAGAAGATGGGTTGTTGATTCAGCTGGTTGAACAATATGGATTGAGGAAGTGGTCTCATATTGCTCAGATGCTGCCTGGTAGAATTGGAAAACAGTGCAGAGAGAGGTGGCATAATCATCTAAGGCCTGACATTAAGAAGGACATATGGAGTGAGGAAGAGGACAAAATATTGATCAAAGCTCATGGAGAGATAGGAAACAAATGGGCTGAGATTGCTAAAATGTTACCTGGAAGAACAGAAAATTCAATCAAAAACCATTGGAATGCAACAAAGAGAAGACAACATTCCAAAAGAAAGTGTCGTTCAAAGTACCCTAGAGGAACACTTCTTCAAGAATATATCAAGAGCTTGAACTTAGACAAAAACCCTCCAAAAGATTATAGAAGAAAATCTTCAACTAATGCTAGTGTGCTGAAAAACAAAACCAACAAAAGCACAACAATATCAGCTCAGTCTCAGAAAGCAGAACAATCTTGTCCAAGTGATGATCAGTGTTTGGTACCAAGCTGTGATTTTGATGATGTCCCCGATTTTTATTTCGACGAAAATTTGTTTCAAGATGGGTGTAGTATTGATTCTTTGCTAGATGATATACAATGTGATGAAATTATGGAAGAAAAAAAACATTGTGATAATGTTGAGACAGAGATGCCACTAGAGATTATGGAATCTATGCTTGGAATTGAAGTTAAGAAGGAGATGGATTTGATTGAGATGGTTTTCTCAAGTTAA 1293 0.3442 MDLETKLTKNYYFKSNMKNHENNPFGGVPSSQGILQDFNHIDKFNVNGSFFNPISGVQNFAPSYNFTYDVHHDFKPFVENNSSNNGNAYVMDNFLYGNYGLNNLSQRNNQVEIMVTNTNQSNYFPFNISQETKPLNFGVPDEVSCISPLNYYKRINMNKNNKGYLTSRKTQKVRKRSNVVKGQWTVAEDGLLIQLVEQYGLRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKILIKAHGEIGNKWAEIAKMLPGRTENSIKNHWNATKRRQHSKRKCRSKYPRGTLLQEYIKSLNLDKNPPKDYRRKSSTNASVLKNKTNKSTTISAQSQKAEQSCPSDDQCLVPSCDFDDVPDFYFDENLFQDGCSIDSLLDDIQCDEIMEEKKHCDNVETEMPLEIMESMLGIEVKKEMDLIEMVFSS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02700 430 CDD SANT 236 278 IPR001005 -
Trre5g02700 430 MobiDBLite consensus disorder prediction 308 342 - -
Trre5g02700 430 FunFam Transcription factor MYB119 234 298 - -
Trre5g02700 430 FunFam Transcriptional activator Myb isoform A 180 233 - -
Trre5g02700 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 176 231 IPR017930 -
Trre5g02700 430 MobiDBLite consensus disorder prediction 316 342 - -
Trre5g02700 430 SMART sant 180 229 IPR001005 -
Trre5g02700 430 SMART sant 232 280 IPR001005 -
Trre5g02700 430 CDD SANT 184 227 IPR001005 -
Trre5g02700 430 Gene3D - 180 233 - -
Trre5g02700 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 232 282 IPR017930 -
Trre5g02700 430 Pfam Myb-like DNA-binding domain 236 275 IPR001005 -
Trre5g02700 430 Pfam Myb-like DNA-binding domain 181 227 IPR001005 -
Trre5g02700 430 ProSiteProfiles Myb-like domain profile. 228 278 IPR001005 -
Trre5g02700 430 SUPERFAMILY Homeodomain-like 178 274 IPR009057 -
Trre5g02700 430 ProSiteProfiles Myb-like domain profile. 176 227 IPR001005 -
Trre5g02700 430 Gene3D - 235 296 - -
Trre5g02700 430 PANTHER MYB PROTEIN-RELATED 157 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02700 Trre-Chr5 21407826 21409877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02700 87 385 MYB Transcription Factor Family AT4G18770 52.716 1.16e-96 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre5g02700 Myb_DNA-binding 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02700 K09422 - gmx:102662267 498.434