LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g02671	ATGATGGAAAAGAGTGATGGGTTTGTAAGAGCTGATCTAATTGATCTCAAGAGCATAGATGAACAACTTGAGAAACATCTCAACAAAGCATCATTGACTACTACAGATCATCATAAGCAGAAAGAGGAAGAAGATTTTAATGGTGATGTTTTGAACAAGCAAAGACAAGAGTGGGAAATTGATCCTTCTAACCTCATCATCAAAAGTGTTATAGCTCGTGGCACTTTTGGAACTGTTCACCGTGGTATCTATGATGGTCAAGATGTTGCTGTTAAAATGCTGGACTGGGGTGAAGAAGGACACCGGACAGAAGCTGAAATTGCTGCACTCAGGTCCGCATTCACGCAAGAAGTTGTTGTTTGGCATAAACTCGATCATCCTAATGTCACCAAGTTTATAGGAGCAACAATGGGATCTTCTGAATTACAGATACAAACTGAGAATGGTCTAATTAGCCTCCCAAGCAATATCTGCTGTGTGGTTGTAGAGTATCTTCCTGGAGGTGCATTGAAATCCTTTTTAATAAAAAATAGAAGAAGGAAGTTAGCTTTTAAGGTTGTCATCCAGCTCGCACTTGATATGGCGAGAGGACTGAATTATCTTCACTCTCAGAAGATTGTCCACAGAGATGTAAAGACAGAAAATATGCTGTTGGATAAGACGCGTGAAGTTAAAATTGCTGATTTTGGTGTTGCTCGTATTGAAGCCTCGAATCCAAATGACATGACCGGGGAGACTGGTACACTCGGTTACATGGCTCCTGAGGTTTTAAATGGCAATCCCTATAACAGGAAATGTGATGTATATAGTTTTGGCATATGTTTATGGGAAATATATTGTTGCGACATGCCATATCCTGACTTAAGTTTCTCAGAGATTACTTCAGCCGTTGTTCGCCAGAATGTTAGACCAGAAATACCAAGATGTTGTCCAAGTTCTGTGGCGAATGTAATGAAGAAATGCTGGGACGCGAGTCCTGATAAGCGACCTGAAATGGATGAGGTAGTTGCCATGCTTGAAGCTATTGACACATCCAAAGGTGGAGGTATGATCCCTCCTGATCAGCAACAAGGTTGTCTTTGCCTCGGTAAACGCCGCGGGCCTTGA	1107	0.4164	MMEKSDGFVRADLIDLKSIDEQLEKHLNKASLTTTDHHKQKEEEDFNGDVLNKQRQEWEIDPSNLIIKSVIARGTFGTVHRGIYDGQDVAVKMLDWGEEGHRTEAEIAALRSAFTQEVVVWHKLDHPNVTKFIGATMGSSELQIQTENGLISLPSNICCVVVEYLPGGALKSFLIKNRRRKLAFKVVIQLALDMARGLNYLHSQKIVHRDVKTENMLLDKTREVKIADFGVARIEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNVRPEIPRCCPSSVANVMKKCWDASPDKRPEMDEVVAMLEAIDTSKGGGMIPPDQQQGCLCLGKRRGP	368

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g02671	368	SMART	serkin_6	65	342	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g02671	368	Pfam	Protein tyrosine and serine/threonine kinase	67	339	IPR001245	GO:0004672\|GO:0006468
	Trre5g02671	368	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	57	342	-	-
	Trre5g02671	368	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	206	218	IPR008271	GO:0004672\|GO:0006468
	Trre5g02671	368	Gene3D	Transferase(Phosphotransferase) domain 1	165	353	-	-
	Trre5g02671	368	FunFam	Serine/threonine-protein kinase HT1	165	350	-	-
	Trre5g02671	368	Gene3D	Phosphorylase Kinase; domain 1	53	148	-	-
	Trre5g02671	368	PRINTS	Tyrosine kinase catalytic domain signature	266	288	IPR001245	GO:0004672\|GO:0006468
	Trre5g02671	368	PRINTS	Tyrosine kinase catalytic domain signature	200	218	IPR001245	GO:0004672\|GO:0006468
	Trre5g02671	368	PRINTS	Tyrosine kinase catalytic domain signature	162	175	IPR001245	GO:0004672\|GO:0006468
	Trre5g02671	368	PRINTS	Tyrosine kinase catalytic domain signature	310	332	IPR001245	GO:0004672\|GO:0006468
	Trre5g02671	368	ProSiteProfiles	Protein kinase domain profile.	65	342	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g02671	368	SUPERFAMILY	Protein kinase-like (PK-like)	50	339	IPR011009	-
	Trre5g02671	368	FunFam	Kinase suppressor of Ras 1	54	149	-	-
	Trre5g02671	368	CDD	STKc_MAP3K-like	71	339	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g02671	Trre-Chr5	20941153	20943839	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g02671	4	368	MAP Kinase Kinase Kinase	AT3G22750	65.312	0.0	529

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Trre5g02671		PK_Tyr_Ser-Thr	3.2e-63	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g02671	-		-	mtr:11415349	659.448