Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02666 ATGGTAATGGAGATTGTAATTTCTTTGATAATCTTATTTGTTGGGATTGGTATTTTAGTGTCTATTCATTTCTGCATAGTTGGAAGAGCATTCAGAAGGGACAATAACAGTGGAGACATTCAAGGACAGAATAGTAGGAGCACTTCAAAAGGAATGTTTGGTGGTGACAATGGTGACTTGAAGAACCTTCCTTGTTTTGATTATGTAGAACCAACAGAGAAAGGATACAACAACCTTGTAGATTGTGCTGTTTGTTTGGAGAGTTTTAAGGTTGGTGATGCTTGTAGATTGTTGCCTAAATGCAAACACAGTTTTCATGTTCAATGTATAGATTTATGGATTCTCAAGACACCCTTTTGTCCAATTTGTAGAACATGGGTTCATTCCCAAGTAATTGTGAGAGAAGAAAGTGTTGCTTCTGGTTCTGATATTGTAGAAATTGAAATGCCATAG 453 0.362 MVMEIVISLIILFVGIGILVSIHFCIVGRAFRRDNNSGDIQGQNSRSTSKGMFGGDNGDLKNLPCFDYVEPTEKGYNNLVDCAVCLESFKVGDACRLLPKCKHSFHVQCIDLWILKTPFCPICRTWVHSQVIVREESVASGSDIVEIEMP 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02666 150 SMART ring_2 82 123 IPR001841 -
Trre5g02666 150 ProSiteProfiles Zinc finger RING-type profile. 82 124 IPR001841 -
Trre5g02666 150 FunFam RING-H2 finger protein ATL2K 56 130 - -
Trre5g02666 150 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 131 - -
Trre5g02666 150 SUPERFAMILY RING/U-box 81 130 - -
Trre5g02666 150 Pfam Ring finger domain 81 124 IPR001841 -
Trre5g02666 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 132 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02666 Trre-Chr5 20897235 20897687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02666 60 128 C3H Transcription Factor Family AT4G30370 46.377 1.17e-17 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02666 - - gmx:102662620 184.882