Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02664 ATGTCTCCGACCCATCATCGCCGTCCCCTATCCTTCCCTGCCTTTCATCTTCTCATCAATTCCGTTTCGGAATCTCTCGAAGCGTTACCTCTCGGCCTCATCGATGTTTGCGATGAGGTTAAAGAGGTAATTCAATTACTAATCAAACAGAACAGAAAAATCATTCTCAAACTTGACCATAATGACGAACGTGAAGCCAAACGCGTTGATTCAATTTTGAATCAATTCGAGAAAGGTACCGAACCTGATATCGATTCGATCAAACAAGTTCTCGATTATGTTCAAATCAAAACTTGGTTTGATTGCAATGAAGAAATCAAATTCCACCAAGACGAAGAACGAGAGAAAAATCAAAATCATAATCATTTGTTGAGTGGTTTAATTGGTTTTTTATGCTATTGTCGTGTGGTAATATTCGAAACTCTAGATTTTCAATCGTTAAACCGTAGTAATAGATCTCGAATCGGTTGCAGCATTGAGAAATTAAACTCTGTAACACCCGATGATTATCGTTGTCCGATTTCTCTCGAGCTAATGTTAGATCCTGTAACCGTTTCCACTGGCCAAACATATAACAGAGCTTCAATTCAGAGATGGTTTGAAGCCGGAAACATGACATGTCCGAAAACCGGTGAGAAACTCATTTCCAGAGAGTTTTTCCCCAACACAGCACTGAAAAATCTTATCCAACAATTCTGTTATGATAACGGCATTTCAATTTTAACTAACAAATCTCGTAGCGTAACTGCAACAACTGTTAGTCCTGGTAGTTCGGCTGCAGCGCACGCGATACAGTTTGCGTCATGGTCACTTGCTCGGAGACTAGTTTTCGGAACAGATGAACAGAAAAACAAAGCAGCTTATGAGATTCGTTTACTTGCGAAATCAAATGTTTTTAATACCGCGTGTTTGGTTGAGAATGGAACTGTACCGCCGTTGCTTGATCTTGTTTTAACTTCAGCGATGCAAGAGAATGCAATTTCTGCTCTTTTGAAGCTTTCAAAGCATAATAATGGCCGCGAAGTTATCATGGAGAGTCGAGGTTTAAAACCTATTGTTAAAGTTCTTAATAGAGGGTACAGTTTAGAAGCTCGTCGTGTTGCAGCTGGTATAATATTTTATCTAACTTCTGTGAAAGAGTATAGAAAATTAATAGGTGAAAATTCTGAGGCAGTTTCTGGTTTAGTGAAATTGATAAAGGAAGGAACAATTCGAGGAAAAAAAAGTGCAGTGGATGCGATTTTCGGGCTGTTATTGCTTGCTAAGAATCATTCTAAGGTGCTTGCTTCTGGTGTTGTTCCTGGGATTGTTAGCGTTTTAGCTTCTGATAAACGTTATGTTGTTAATGATTGTTTAGCCGTTTTGGTAGCATTAGCAGAGAGTGTGGAAGGCTCTCGTGCCGTATTAGAGTGTTCAGGTTTGTGTTTGGTAATTAGGATTTGGCAGTCTGCAACTTCGCGTGCAGAGAAGGAATACTGTGTTTCTATTTTGTCGTCGTTGTGTGTTAATATTGGTGTGGAAGTTATTGATGTTCTCGCGAAGAATGCTTCCGTTGTTATGCCTTTGCTTTATGCACTTCTTACGGATGGTACACCTCAAGCGGAAAAGAAAGCGCGTAGCCTTATTAATGTTTTGCAAGAATTTGATGAGAAGAGAACTTTGGGAATTGTGGGTTCTTCTGTTATGCAGCAAAGATTACTTCAATTGAATTAG 1713 0.3935 MSPTHHRRPLSFPAFHLLINSVSESLEALPLGLIDVCDEVKEVIQLLIKQNRKIILKLDHNDEREAKRVDSILNQFEKGTEPDIDSIKQVLDYVQIKTWFDCNEEIKFHQDEEREKNQNHNHLLSGLIGFLCYCRVVIFETLDFQSLNRSNRSRIGCSIEKLNSVTPDDYRCPISLELMLDPVTVSTGQTYNRASIQRWFEAGNMTCPKTGEKLISREFFPNTALKNLIQQFCYDNGISILTNKSRSVTATTVSPGSSAAAHAIQFASWSLARRLVFGTDEQKNKAAYEIRLLAKSNVFNTACLVENGTVPPLLDLVLTSAMQENAISALLKLSKHNNGREVIMESRGLKPIVKVLNRGYSLEARRVAAGIIFYLTSVKEYRKLIGENSEAVSGLVKLIKEGTIRGKKSAVDAIFGLLLLAKNHSKVLASGVVPGIVSVLASDKRYVVNDCLAVLVALAESVEGSRAVLECSGLCLVIRIWQSATSRAEKEYCVSILSSLCVNIGVEVIDVLAKNASVVMPLLYALLTDGTPQAEKKARSLINVLQEFDEKRTLGIVGSSVMQQRLLQLN 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02664 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 240 IPR013083 -
Trre5g02664 570 CDD RING-Ubox_PUB 167 214 IPR045210 -
Trre5g02664 570 PANTHER U BOX DOMAIN-CONTAINING 31 545 - -
Trre5g02664 570 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 308 348 IPR000225 GO:0005515
Trre5g02664 570 SMART arm_5 336 377 IPR000225 GO:0005515
Trre5g02664 570 SMART arm_5 297 335 IPR000225 GO:0005515
Trre5g02664 570 SMART Ubox_2 169 232 IPR003613 GO:0004842|GO:0016567
Trre5g02664 570 FunFam RING-type E3 ubiquitin transferase 166 238 - -
Trre5g02664 570 Gene3D - 258 565 IPR011989 -
Trre5g02664 570 ProSiteProfiles U-box domain profile. 165 239 IPR003613 GO:0004842|GO:0016567
Trre5g02664 570 SUPERFAMILY RING/U-box 161 239 - -
Trre5g02664 570 SUPERFAMILY ARM repeat 278 545 IPR016024 -
Trre5g02664 570 Pfam U-box domain 167 236 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02664 Trre-Chr5 20889331 20891361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02664 15 553 U-box Gene Family AT1G10560 38.309 4.29e-121 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02664 - - gmx:100810963 630.557