Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02652 ATGAGTGTAAAACATATCTGGTTCTGGACAGTACTCACTTTTCTGTTTCTGTTTTTTCTATTGATCGATTCAGAATCAGAAAATGTTCGAAAAGCCCTTGTCACGTTCATGCATAAACTTGAACCACCTGATCAGAATTTCGCATGGGGTTGGAATCTCACATCAGATCCGTGCACTCATAACTGGCACGGTGTAACTTGCTCCGCAAACAACCAATACATTAAGAGCATAGTTCTTGAAGAACTTAATCTCACCGGTGTTCTAGACGCGACTTCTCTTTGCATTTCTACATCTCTTCAATTCGTCAGCCTCAACAATAACAATTTACGCGGTTTTATATCAGAGGATATAAGAAACTGCAAGTTCTTGACACACTTGCTTCTTAGTGGTAACGAATTCTCTGGCAATCTTCCTGTTTCCATTTCTCAACTACGCAACATGAAGCGCCTTCATGTTTCCGACAATCGCTTCACCGGAAACCTTCCTAATATGGTTAATGTTACAAGCTTGATATCATTTCTTGCACAAAACAACAAATTCACCGGTCAAATTCCTGATTTCGATTTCTCAAATTTTGAAGCCTTTAATGTCTCTAACAACGATTTACGCGGTCCTGTTCCAGACGTTAGAGGTAGATTTGGTGCTGACAGTTTTTATGGTAATCCTAATCTATGTGGAAAACCAATTTCAAACTCTTCATGTCCACCACCGCCACCACCTCCTCCTCCAATTGCTAACAAAGACAAAATCATAAATCAATTTCTTGATGATTTACCGATTTATTCAGGTTACATAGTTATTGGTTTAATTTTATTGATTTTCTTGATCTTCAAGTTGTTAAGGAAATGCAAGACGAAAGATAAAGAAAAAGGATTAGATCATGTTGAAAAGAAGGACATGTCACAAGACAATAGTGTTGTTGTTGGAGGTGGTGAAAAGCTTAGTGAGATACTTAATTCCAATGGATCAAAGAATTGGTTTAATGGCCTTGGGATGAAATCAGAGTATTCTATGACATCTATGGAAAGTGGAGTGACTACATCAGGTCTTGTTCTTCTTTCTAGTAGAAAGCTAAGGGGATTGCAATTTGAGGATTTGTTAAGTGCTCCTGCTGAATTGATTAAGAGAGGAAAACATGGAAGCTTATACAAGGTTATGTTAGATAATGGTGTGCTTTTGGCTGTTAAGAGGATCAAGGATTGGGGAATTTCAAAGCATGATTTTGAGAGAAGGATGAATTTGATAGCTCAAGTAAAGCATCCTCTTGTAATGTCACCTGTTGCATACTATTGTTCTCAGCAAGAGAAGCTTCTGGCTTATGAATATCTTCCAAATGGTAGCCTCTTCATGTTGCTCTATGGATCTCAAAGCGGACATTCGCTTGACTGGAGGAGTAGACTAGACGTTGCCACTAAAATAGCTGAAGCTTTGGCGTATATGCACGAGGAGCTTGGTGAGAGTGGAATAGCACACGGCAATTTAAAATCAAGTAACATTCTGTTTGACAAGAATATGAATCCACAAATAAGCGAATATGGCCTAATGGTTTCTCATAAAAAAAGCATAAAAAACAGAAATATGTCTGCAGCCATATTCAGAGCAGATATATACGCATTTGGTGTGATACTTCTGGAACTCCTGACAGGGAAAGTGGTTAAAAACGATGGATTCGATTTGGTTAAATGGGTGAATTCAGTGATCAGTGAAGAATGGACTGCAGAAGTTTTTGACAGGTACCTAATCTCACAAGGTGCTTCTGAAGAGAGGATGGTGAACTTGTTGCAGGTGGCATTGAAATGCACAAATCCTTCTCCAAATGACAAGCTAAGTATGAGTCAAGTGGCACTCATCACAAATGCATTGAAAGATGAAGATGACAAATCCATATCCTTTAACACATAG 1902 0.3849 MSVKHIWFWTVLTFLFLFFLLIDSESENVRKALVTFMHKLEPPDQNFAWGWNLTSDPCTHNWHGVTCSANNQYIKSIVLEELNLTGVLDATSLCISTSLQFVSLNNNNLRGFISEDIRNCKFLTHLLLSGNEFSGNLPVSISQLRNMKRLHVSDNRFTGNLPNMVNVTSLISFLAQNNKFTGQIPDFDFSNFEAFNVSNNDLRGPVPDVRGRFGADSFYGNPNLCGKPISNSSCPPPPPPPPPIANKDKIINQFLDDLPIYSGYIVIGLILLIFLIFKLLRKCKTKDKEKGLDHVEKKDMSQDNSVVVGGGEKLSEILNSNGSKNWFNGLGMKSEYSMTSMESGVTTSGLVLLSSRKLRGLQFEDLLSAPAELIKRGKHGSLYKVMLDNGVLLAVKRIKDWGISKHDFERRMNLIAQVKHPLVMSPVAYYCSQQEKLLAYEYLPNGSLFMLLYGSQSGHSLDWRSRLDVATKIAEALAYMHEELGESGIAHGNLKSSNILFDKNMNPQISEYGLMVSHKKSIKNRNMSAAIFRADIYAFGVILLELLTGKVVKNDGFDLVKWVNSVISEEWTAEVFDRYLISQGASEERMVNLLQVALKCTNPSPNDKLSMSQVALITNALKDEDDKSISFNT 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02652 633 SUPERFAMILY Protein kinase-like (PK-like) 372 615 IPR011009 -
Trre5g02652 633 Gene3D Transferase(Phosphotransferase) domain 1 443 632 - -
Trre5g02652 633 Gene3D Phosphorylase Kinase; domain 1 339 442 - -
Trre5g02652 633 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Trre5g02652 633 SUPERFAMILY L domain-like 27 211 - -
Trre5g02652 633 ProSiteProfiles Protein kinase domain profile. 368 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g02652 633 PANTHER OS05G0588300 PROTEIN 11 622 - -
Trre5g02652 633 Gene3D Ribonuclease Inhibitor 26 213 IPR032675 -
Trre5g02652 633 FunFam Nuclear pore complex protein NUP107 26 186 - -
Trre5g02652 633 Pfam Protein kinase domain 374 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02652 Trre-Chr5 20819176 20821963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02652 46 624 Receptor kinase-like Gene Family AT2G36570 34.277 1.00e-94 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre5g02652 Pkinase 4.1e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02652 - - pvu:PHAVU_009G180700g 798.505