Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02642 ATGGGTGGAAATGGAAATGGTAAGCATAGATGGAAAATCTCCTTTCATCGTTCTTCCTCTCATTCTAGTAGAAACTCACAACCTCCCAAAGAGTTTCTATGTCCTATTACCGGTTCATTAATGTCCGACCCGGTCGTTGTTACTTCGGGTCAAACCTTTGAACGCCTCGCCGTCGAAATCTCCACCGAATTCAAATTCTCTCCCAAGTTAGAAGACGGAACCCGACCCGATTTCTCAACAATCATCCCCAATTTAGCTATCAAAACAACTATAACAAACTGGTGCGACAAATCCCGCACCCAATACCCTCCCACACCTGATTACACCACCGTAGAGAAGCTAATTAAAGAAGCAATGGCGGCTGCGGTTGCCGCGGAGAAGGAAGAGCCGATTAGGGTTTCTGAAAAGGAGCTGCTCAACGCGGTGGCGGATAATCCTCCGGTTATATTCTCCCACGCTGCAACTGAGTTAGGTCCATGTGTCAACCGTTTCAACTCGGGATCTTCCTCTGAGGAATCGGTGATAATCGGTGAGAGTCCAGGAACGCCTTTACCTTTCACGCTTCGTCCAACGTGTTTTTCTCCTTCTTCATCTTCCTCGTTCGAGATCGAAGTTCAAAACCCTAACGTTCCTCCTTCAGAAGAAGAAGAAAGTTTACTGAAGAAGCTGAAGAGCAACGAGGTTTTCGAACAAGAACAAGGAGTGATTAGTCTTAGAAGTATCACTAGGAACAGAGAAGAAGCTAGGGTTTCGCTATGTACGTCGCGGATTCTTGTGATTCTGCGTTCACTGATTGCTTCTCGTTACGTCGTCGTTCAGGTCAACGCTATTGCTTCTTTGGTCAACCTTTCGCTTGAGAAATCGAACAAGATGAGAATTGTGCGGTCAGGATTTGTTCCGTTTCTCATTGATGTGTTGAAGGGGGGATCCAGTGAGGCGCAGGAACACGCTGCGGGTGCACTGTTTAGTTTGGCTTTGGATGATGATAACAAGATGGCAATTGGTGTTCTCGGCGCGTTGGAACCGCTAATGCATGCACTGAGGTCTGATTCCGAGCGAACTCGCCATGACTCGGCGCTTGCTCTCTATCATTTGACTCTAGTTCAGAGTAACAGAGTTAAGCTTGTGAAACTCGGGGTGGTTCCGACATTGCTTTCGATGGTGATGACAGGGACAATGGCGAGTAGGGTGTTGTTGATTCTGTGCAATCTTGCTATGTCTGTGGAGGGAAGGACGGCAATGCTGGACGCCAATGCGGTGGAGTGTATGGTGAGTTTGTTGAGGGGGAACGAGTTGGACTCGGAAGCAACTCGGGAGAATTGTGTGGCGGCGTTGTATGCATTGAGTCATGGAAGTTTGAGGTTCAAAGGGTTGGCAAAGGAAGCAAAAGCTGTTGAGGTTTTGAGGGTGATCGAAGAGACGGGAACAGAGAGGGCGAGGGAGAAGGCTAAAAGGGTGTTGCAGAAGATGAGGGGATTTGAAGATGGTGATGATGAAGATGATTCTGGGTTTGATAGTCTTTTTGAATCGAGCGGGATGACTCGAACGAGGTATCGAGGTGCAGGAGCTAGGAACAACAACCTTGTCAATTCAACTACATTTTAG 1605 0.4766 MGGNGNGKHRWKISFHRSSSHSSRNSQPPKEFLCPITGSLMSDPVVVTSGQTFERLAVEISTEFKFSPKLEDGTRPDFSTIIPNLAIKTTITNWCDKSRTQYPPTPDYTTVEKLIKEAMAAAVAAEKEEPIRVSEKELLNAVADNPPVIFSHAATELGPCVNRFNSGSSSEESVIIGESPGTPLPFTLRPTCFSPSSSSSFEIEVQNPNVPPSEEEESLLKKLKSNEVFEQEQGVISLRSITRNREEARVSLCTSRILVILRSLIASRYVVVQVNAIASLVNLSLEKSNKMRIVRSGFVPFLIDVLKGGSSEAQEHAAGALFSLALDDDNKMAIGVLGALEPLMHALRSDSERTRHDSALALYHLTLVQSNRVKLVKLGVVPTLLSMVMTGTMASRVLLILCNLAMSVEGRTAMLDANAVECMVSLLRGNELDSEATRENCVAALYALSHGSLRFKGLAKEAKAVEVLRVIEETGTERAREKAKRVLQKMRGFEDGDDEDDSGFDSLFESSGMTRTRYRGAGARNNNLVNSTTF 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02642 534 Gene3D - 212 491 IPR011989 -
Trre5g02642 534 SUPERFAMILY RING/U-box 14 103 - -
Trre5g02642 534 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 297 334 IPR000225 GO:0005515
Trre5g02642 534 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
Trre5g02642 534 FunFam RING-type E3 ubiquitin transferase 214 490 - -
Trre5g02642 534 Pfam Armadillo/beta-catenin-like repeat 327 366 IPR000225 GO:0005515
Trre5g02642 534 FunFam RING-type E3 ubiquitin transferase 11 102 - -
Trre5g02642 534 PANTHER U BOX DOMAIN-CONTAINING 23 490 - -
Trre5g02642 534 SMART arm_5 407 450 IPR000225 GO:0005515
Trre5g02642 534 SMART arm_5 327 367 IPR000225 GO:0005515
Trre5g02642 534 SMART arm_5 286 326 IPR000225 GO:0005515
Trre5g02642 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 105 IPR013083 -
Trre5g02642 534 SUPERFAMILY ARM repeat 218 490 IPR016024 -
Trre5g02642 534 MobiDBLite consensus disorder prediction 1 31 - -
Trre5g02642 534 Pfam U-box domain 29 98 IPR003613 GO:0004842|GO:0016567
Trre5g02642 534 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02642 Trre-Chr5 20749930 20751534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02642 28 534 U-box Gene Family AT5G65200 57.547 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02642 - - gmx:100784564 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g00317 11 2507959 2509554 Trre5g02642 5 20749930 20751534 ECH
Trre5g02642 5 20749930 20751534 Trre5g02642 5 20749930 20751534 ECH