LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g02642	ATGGGTGGAAATGGAAATGGTAAGCATAGATGGAAAATCTCCTTTCATCGTTCTTCCTCTCATTCTAGTAGAAACTCACAACCTCCCAAAGAGTTTCTATGTCCTATTACCGGTTCATTAATGTCCGACCCGGTCGTTGTTACTTCGGGTCAAACCTTTGAACGCCTCGCCGTCGAAATCTCCACCGAATTCAAATTCTCTCCCAAGTTAGAAGACGGAACCCGACCCGATTTCTCAACAATCATCCCCAATTTAGCTATCAAAACAACTATAACAAACTGGTGCGACAAATCCCGCACCCAATACCCTCCCACACCTGATTACACCACCGTAGAGAAGCTAATTAAAGAAGCAATGGCGGCTGCGGTTGCCGCGGAGAAGGAAGAGCCGATTAGGGTTTCTGAAAAGGAGCTGCTCAACGCGGTGGCGGATAATCCTCCGGTTATATTCTCCCACGCTGCAACTGAGTTAGGTCCATGTGTCAACCGTTTCAACTCGGGATCTTCCTCTGAGGAATCGGTGATAATCGGTGAGAGTCCAGGAACGCCTTTACCTTTCACGCTTCGTCCAACGTGTTTTTCTCCTTCTTCATCTTCCTCGTTCGAGATCGAAGTTCAAAACCCTAACGTTCCTCCTTCAGAAGAAGAAGAAAGTTTACTGAAGAAGCTGAAGAGCAACGAGGTTTTCGAACAAGAACAAGGAGTGATTAGTCTTAGAAGTATCACTAGGAACAGAGAAGAAGCTAGGGTTTCGCTATGTACGTCGCGGATTCTTGTGATTCTGCGTTCACTGATTGCTTCTCGTTACGTCGTCGTTCAGGTCAACGCTATTGCTTCTTTGGTCAACCTTTCGCTTGAGAAATCGAACAAGATGAGAATTGTGCGGTCAGGATTTGTTCCGTTTCTCATTGATGTGTTGAAGGGGGGATCCAGTGAGGCGCAGGAACACGCTGCGGGTGCACTGTTTAGTTTGGCTTTGGATGATGATAACAAGATGGCAATTGGTGTTCTCGGCGCGTTGGAACCGCTAATGCATGCACTGAGGTCTGATTCCGAGCGAACTCGCCATGACTCGGCGCTTGCTCTCTATCATTTGACTCTAGTTCAGAGTAACAGAGTTAAGCTTGTGAAACTCGGGGTGGTTCCGACATTGCTTTCGATGGTGATGACAGGGACAATGGCGAGTAGGGTGTTGTTGATTCTGTGCAATCTTGCTATGTCTGTGGAGGGAAGGACGGCAATGCTGGACGCCAATGCGGTGGAGTGTATGGTGAGTTTGTTGAGGGGGAACGAGTTGGACTCGGAAGCAACTCGGGAGAATTGTGTGGCGGCGTTGTATGCATTGAGTCATGGAAGTTTGAGGTTCAAAGGGTTGGCAAAGGAAGCAAAAGCTGTTGAGGTTTTGAGGGTGATCGAAGAGACGGGAACAGAGAGGGCGAGGGAGAAGGCTAAAAGGGTGTTGCAGAAGATGAGGGGATTTGAAGATGGTGATGATGAAGATGATTCTGGGTTTGATAGTCTTTTTGAATCGAGCGGGATGACTCGAACGAGGTATCGAGGTGCAGGAGCTAGGAACAACAACCTTGTCAATTCAACTACATTTTAG	1605	0.4766	MGGNGNGKHRWKISFHRSSSHSSRNSQPPKEFLCPITGSLMSDPVVVTSGQTFERLAVEISTEFKFSPKLEDGTRPDFSTIIPNLAIKTTITNWCDKSRTQYPPTPDYTTVEKLIKEAMAAAVAAEKEEPIRVSEKELLNAVADNPPVIFSHAATELGPCVNRFNSGSSSEESVIIGESPGTPLPFTLRPTCFSPSSSSSFEIEVQNPNVPPSEEEESLLKKLKSNEVFEQEQGVISLRSITRNREEARVSLCTSRILVILRSLIASRYVVVQVNAIASLVNLSLEKSNKMRIVRSGFVPFLIDVLKGGSSEAQEHAAGALFSLALDDDNKMAIGVLGALEPLMHALRSDSERTRHDSALALYHLTLVQSNRVKLVKLGVVPTLLSMVMTGTMASRVLLILCNLAMSVEGRTAMLDANAVECMVSLLRGNELDSEATRENCVAALYALSHGSLRFKGLAKEAKAVEVLRVIEETGTERAREKAKRVLQKMRGFEDGDDEDDSGFDSLFESSGMTRTRYRGAGARNNNLVNSTTF	534

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Trre5g02642	534	Gene3D	-	212	491	IPR011989	-
Trre5g02642	534	SUPERFAMILY	RING/U-box	14	103	-	-
Trre5g02642	534	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	297	334	IPR000225	GO:0005515
Trre5g02642	534	SMART	Ubox_2	31	94	IPR003613	GO:0004842\|GO:0016567
Trre5g02642	534	FunFam	RING-type E3 ubiquitin transferase	214	490	-	-
Trre5g02642	534	Pfam	Armadillo/beta-catenin-like repeat	327	366	IPR000225	GO:0005515
Trre5g02642	534	FunFam	RING-type E3 ubiquitin transferase	11	102	-	-
Trre5g02642	534	PANTHER	U BOX DOMAIN-CONTAINING	23	490	-	-
Trre5g02642	534	SMART	arm_5	407	450	IPR000225	GO:0005515
Trre5g02642	534	SMART	arm_5	327	367	IPR000225	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g02642	Trre-Chr5	20749930	20751534	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g02642	28	534	U-box Gene Family	AT5G65200	57.547	0.0	555

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g02642	-		-	gmx:100784564	731.48

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre11g00317	11	2507959	2509554	Trre5g02642	5	20749930	20751534	ECH
	Trre5g02642	5	20749930	20751534	Trre5g02642	5	20749930	20751534	ECH

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