Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02639 ATGGCGATAACAGTAGCAACTAGACAACTATTCATTGATGGAGAGTGGAAAGCTCCTATCCTCAACAAAAGAATTCCAATCATCAATCCCTCCACTGAAAACATCATAGGGGATATACCTGCTGCTACTAAGGAAGATGTTGACTTTGCTGTGGAGGCTGCTAAAAGAGCCTTGTCTCGGAACAAGGGTAGAGATTGGTCGAAGGCTTCTGGCTCCGTTCGTGCTGGCTATCTTCGAGCCATTGCTGCAAAGATAACTGAGAAAAAGAATGAACTGGGCAAGCTAGAATCAATTGATTGTGGAAAACCACTGGAGGAAGCACTCGCGGATCTGGATGATGTTATTGCTTGTTTTGAGTACTATGCTGGACTTGCCGAAGGGTTGGATGCAAAGCAAAAGGCTCCTGTATCTCTTCCTATGGATACCTTCAAGAGCCATGTTCTCAAGGAGCCTATCGGTATTGTAGCATTAATTACTCCATGGAACTATCCTCTCTTAATGGCAACATGGAAAGTTGCTCCAGCTCTGGCTGCTGGTTGTGCTGCAATATTGAAACCGTCTGAAGTAGCATCTGTGACCTGTTTGGAGTTAGGCGAAATATGTAGAGAAGTCGGCCTTCCTGCTGGTGTCTTAAATATTGTCACTGGATTAGGCCATGAAGCTGGTGCTTCTTTAGCATCTCATCCTGACGTAGATAAGATTTCCTTTACGGGTAGCTCTGCAACTGGGAGCAGGATTATGACAGCTGCGGCGCAGCTAATCAAGCCCGTTTCACTCGAGCTTGGTGGAAAGAGCCCAATCGTTGTGTTTGAGGATGTTGACCTTGATAAGGTTGCTGAATGGACCATCTTTGGCTGCTTCTTTACAAATGGTCAGATATGCAGCGCAACATCTCGCCTTATTGTGCATGAAAGTATAGCAAAAGAATTTGTGAATAAACTTGTGAAATGGGCCGAAAACATCAAAATTTCCGATCCCTTGGAAGAAGGTTGCAGGCTAGGCCCTATTGTCAGTGAAGCACAGTATAAGAAAGTATTAAATTTTATCGCAACGGCTAAGAGCGAGGGTGCAACAATTTTAACTGGTGGGCGTCGCCCAGAGCATTTACAGAAGGGGTACTTTGTCGAACCAACCATTGTAACCGATGTGACTACCTCAATGCAAATTTGGAGAGAAGAAGTTTTTGGACCTGTACTCTCTGTAAAAACATTTAGCACCGAAGAAGAAGCTATTGATCTAGCAAATGACACTCACTATGGCTTGGGGTCAGCTGTAATGTCAAATGATTTAGAAAGATGCGAGCGTGTATCTAAGGCTCTACAAGCTGGAATTGTATGGATCAATTGTGCTCAACCAAGCTTCATTCAAGCTCCATGGGGAGGCATTAAACGTAGCGGTTTTGGTCGCGAATTAGGAGAATGGGGACTTGATAACTACTTGAGTGTGAAGCAAGTTACGACGTACATATCTGGTGATCAGTGGGGCTGGTATCAATCCCCTTCAAAGCTGTGA 1512 0.4451 MAITVATRQLFIDGEWKAPILNKRIPIINPSTENIIGDIPAATKEDVDFAVEAAKRALSRNKGRDWSKASGSVRAGYLRAIAAKITEKKNELGKLESIDCGKPLEEALADLDDVIACFEYYAGLAEGLDAKQKAPVSLPMDTFKSHVLKEPIGIVALITPWNYPLLMATWKVAPALAAGCAAILKPSEVASVTCLELGEICREVGLPAGVLNIVTGLGHEAGASLASHPDVDKISFTGSSATGSRIMTAAAQLIKPVSLELGGKSPIVVFEDVDLDKVAEWTIFGCFFTNGQICSATSRLIVHESIAKEFVNKLVKWAENIKISDPLEEGCRLGPIVSEAQYKKVLNFIATAKSEGATILTGGRRPEHLQKGYFVEPTIVTDVTTSMQIWREEVFGPVLSVKTFSTEEEAIDLANDTHYGLGSAVMSNDLERCERVSKALQAGIVWINCAQPSFIQAPWGGIKRSGFGRELGEWGLDNYLSVKQVTTYISGDQWGWYQSPSKL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02639 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Trre5g02639 503 Pfam Aldehyde dehydrogenase family 23 485 IPR015590 GO:0016491
Trre5g02639 503 PANTHER ALDEHYDE DEHYDROGENASE 5 502 - -
Trre5g02639 503 CDD ALDH_F10_BADH 27 487 - -
Trre5g02639 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Trre5g02639 503 SUPERFAMILY ALDH-like 4 486 IPR016161 GO:0016491
Trre5g02639 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
Trre5g02639 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Trre5g02639 503 FunFam Betaine aldehyde dehydrogenase 263 454 - -
Trre5g02639 503 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02639 Trre-Chr5 20680364 20684089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02639 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 76.647 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02639 K00130 - gmx:100170755 894.419