Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02638 ATGGGAATTGCAGAGGAGAGAGTAGTGGCAGTTATTATGGTTGGAGGACCCACCAAAGGTACTCGATTCCGTCCATTATCATTCAACATTCCAAAACCACTTTTTCCATTAGCCGGACAACCCATGGTTCATCACCCAATCTCCGCTTGTCAAAAAATTCCAAATTTGGCTAAGATTTATCTTATTGGATTCTACGAAGAACGCGAATTTGCATTATATGTATCCTCTATTTCCAACGACCTTAAACTACCTGTTAGGTACTTGAAGGAGGACAAACCACATGGATCAGCTGGTGGTCTTTATAACTTTAAAGATCTCATCATCGAAGAAGATCCGTCACATATTTTCTTGCTCAATTGTGATGTTTGCTGCAGTTTTCCACTCCCACAAATGCTTGATGCTCACAAAAAATACGGTGGCATGGGAACAATACTAGTTGTCAAGGTTTCTCCGGAGTCGGCAAGCGAATTTGGGGAATTGGTAGCTGATCCAGTCACTAATGAGCTCTTGCATTACACAGAGAAACCTGAAACTTTTGTTAGTGATCGTATAAATTGCGGTGTGTATATATTTACACCAGATATCTTTACTGCCATTGAGGGTGTTTCTTCTCAGCGGAAAGATAGAGCTAACTTAAGACGTGTCTCCAGCTTTGAAGCAATGCAGCCAGACGCAAGGAGTCTTACCGCCAATTATGTCAGATTGGATCAAGATATCCTCTCACCTCTTGCAGGAAAAAAACAGTTGTATATATATGAAACCATGGATTTCTGGGAACAAATCAAAACTCCTGGAATGTCCATAAAATGTTCGGCCTTGTATCTTTCGCAATTTCGTCACACAGCCCCACACCTATTAGAAAATGGAGATGGTATCAAGAAAGCCTGCATCATTGGTGATGTTTATATTCATCCATCAGCAAAAGTGCATCCCTCTGCAAAGATTGGTCCTGGCGTATCAATATCAGCAAATGCTCGTATAGGAGCTGGTGCAAGGCTCATAAATTGTATAGTCCTTGATGATGTCGAAATCAAGGAGAATGCTGTTGTTATTCATGCAATTGTTGGATGGAAATCCTCCATTGGACGATGGGCTCGTGTCCAGGGTCGTGGAGATTACAATGCAAAACTTGGGGTCACTATTCTTGGTGAATCTGTTGCTGTTGAGGATGAGGTAGTGGTTATTAATAGCATTGTCCTTCCACACAAGACCTTAAATGTTGGTGTTCAAGATGAGATTATATTATAG 1248 0.4119 MGIAEERVVAVIMVGGPTKGTRFRPLSFNIPKPLFPLAGQPMVHHPISACQKIPNLAKIYLIGFYEEREFALYVSSISNDLKLPVRYLKEDKPHGSAGGLYNFKDLIIEEDPSHIFLLNCDVCCSFPLPQMLDAHKKYGGMGTILVVKVSPESASEFGELVADPVTNELLHYTEKPETFVSDRINCGVYIFTPDIFTAIEGVSSQRKDRANLRRVSSFEAMQPDARSLTANYVRLDQDILSPLAGKKQLYIYETMDFWEQIKTPGMSIKCSALYLSQFRHTAPHLLENGDGIKKACIIGDVYIHPSAKVHPSAKIGPGVSISANARIGAGARLINCIVLDDVEIKENAVVIHAIVGWKSSIGRWARVQGRGDYNAKLGVTILGESVAVEDEVVVINSIVLPHKTLNVGVQDEIIL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02638 415 SUPERFAMILY Nucleotide-diphospho-sugar transferases 9 357 IPR029044 -
Trre5g02638 415 FunFam Mannose-1-phosphate guanyltransferase alpha 7 278 - -
Trre5g02638 415 Pfam Nucleotidyl transferase 10 209 IPR005835 GO:0009058
Trre5g02638 415 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 9 415 - -
Trre5g02638 415 FunFam Putative GDP-mannose pyrophosphorylase 284 412 - -
Trre5g02638 415 CDD M1P_guanylylT_A_like_N 10 274 - -
Trre5g02638 415 Gene3D Hexapeptide repeat proteins 281 412 - -
Trre5g02638 415 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 9 277 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02638 Trre-Chr5 20672475 20677427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02638 4 350 Eukaryotic Initiation Factors Gene Family AT2G34970 21.964 7.25e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02638 K00966 - gmx:100817201 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02638 5 20672475 20677427 Trre5g02638 5 20672475 20677427 ECH