Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02627 ATGGATTCGTTTGATGCTGACACAAATGGAAATGGAAATGGGAAGGAGGAGTCTTTACCTCCACCACCTCCAGTTGTCCCCTCAGATGTGGTACCTCTCAAAGCAGAGGAGGTGATCCCATCCCCTCCAGAACCTGTTAAGAAGAAAATTACCCGATTGCCAATAGCCAGACGTGGTCTGGGATCAAAAGGAAATAAGATACCTCTTTTAACTAATCACTTCAATGTTAATATTGGTAACAATGATGGATTTTTTTTCCAGTACAGTGTGTCTTTTGCTTATGAAGACGGAACCCCTGTGGAAGCTAAGGGTGTCGGAAGGAAGATAATGGATAGGGTGCAGGAGACATATGCTTCCGACTTGAATGGCAAGCAATTTGCATATGATGGGGAGAAAAGTCTGTTTACTATCGGCTCTCTTCCTCAAAACAAACTTGAGTTTGAAATTGTTTTAGAGGATGTCACATCTAACAGAAATAATGGCAATCGTAGTCCTGATGCCAATGGGGACAATGATAGTGACAAAAAGAGGGTGCGACGCCCATACCATGCAAAGACATTCAAAGTTGAGATTAGCTTTGCTACTAAAGTTCCTATGTATGCCATTGCCAATGCGTTGCGCGGACAGGAAACAGATAATTTCCAAGAAGCTGTTAGAGTTCTTGATATCATATTGAGGCAACATGCTGCCAAGCAGGGCTGCCTACTTGTGCGCCAGAATTTCTTTCATAATGATCCCAAGAATTTTGCTGATGTGGGCGGTGGCGTTCTAGGCTGTAGAGGATTCCATTCAAGTTTTAGAGCTACACAAAGCGGGCTATCTCTTAACATAGATGTCACGACTACCATGATAATTCAACCTGGCCCTGTGGTGGATTTCTTAATTTCTAATCAAAATGTGAGAGATCCTTTTACTCTCGACTGGGCAAAGGCCAAAAGGACACTAAAGAATCTGAGGGTTAAAACTCACCCATCCAATCAAGAGTTTAAAATTTCTGGACTCAGTGAAGTCCCATGCAAAGAGCTTACTTTTACTTTGAAGAAAAGGGATGGGGATGGTACTGAAGAGATGACTGTTTTGGATTATTTTACTAATGTCCGGAAGATAGATCTGCGCTACTCCGCTGATCTTCCATGTATTAATGTTGGCAGGCCTAAACGGCCAACATATTTCCCCATTGAGCTGTGTGAACTGGTATCGTTGCAACGATATACAAAATCTTTGTCAACCCTTCAAAGGGCGTCATTGGTGGAGAAGTCCAGACAGAAGCCACAAGAGAGGATGAGAATTTTGTCGGATGCACTTAAAACCAGTAACTATGGTGCTGAACCTCTGCTACAAAGTTGTGGAATCACTATAAGCACAGGCTTTACTCAAGTGGAGGGACGTGTTCTGCCTGCTCCAAGGTTGAAGTTTGGAAATGGTGAAGATTTCAATCCAAGAAATGGAAGATGGAACTTCAACAACAAGAAATTTGTGCAGCCTACAAAGATAGAGAAATGGGCCGTGGCAAACTTCTCCGCACGATGTGATGTGCGAGGACTTGTGAGGGATATAATTAGAATTGGAAATATGAAAGGAATTATGATTGACCAACCATTTGATGTGTTTGAAGAAAATCCTCAGTTTAGACGTGCCCCACCAATGGTTAGAGTGGAGAAGATGTTTGAGGATATTCAGTCTAAACTTCCTGGGGCTCCTCAGTTCCTTCTCTGTTTGCTTCCTGATCGAAAAAACTGTGATATTTATGGGCCATGGAAAAAGAAGAATCTTGCTGATTATGGAATCATTAATCAGTGCATGTGTCCTCTAAGAGTCAATGATCAGTATCTGGGCAATATTATGTTGAAGATCAATGCCAAGCTTGGTGGGCTGAACTCATTGTTGGGTGTTGAAAGTACTCCTTCTCTTCCTATTGTTTCCAAAGCACCCACTCTCATTCTAGGAATGGATGTGTCACATGGCTCACCAGGGCAGACTGATATTCCTTCAATTGCGGCTGTTGTCAGCTCTAGACAGTGGCCTCTGATTTCAAAATATAGAGCATGTGTTCGCACACAGTCTGCAAAAGTTGAAATGATAGATAACTTGTTCAAGAAAGTATCAGATACCGAGGATGAAGGAATCATAAGGGAACTCTTGCTCGATTTCTATAATAGTTCTGGCAAGAGAAAACCAGATAACATAATCATTTTCAGGGACGGTGTTAGCGAATCCCAATTCAATCAAGTCCTGAATATCGAACTTGACCAGATCATTGAGGCATGCAAATTCCTTGATGAAAAATGGAACCCGAAATTTGCAGTCATTGTTGCTCAGAAGAACCACCACACAAGATTCTTCCAGCCCAATGCTCCTGAGAATGTCCCACCTGGTACTGTTATTGATAACAAAATTTGTCATCCGAGAAATTATGATTTCTACCTCTGTGCTCATGCTGGGATGATAGGTACCAGTAGGCCTACTCACTACCATGTGCTGCTTGATGAGATTGGTTTCTCCCCTGATGAACTTCAGGAGCTTGTTCATTCCCTATCATATGTTTACCAGAGGAGCACAACAGCTATTTCAGTTGTTGCACCTGTATGCTATGCTCACTTGGCTGCAACTCAGCTGGGACAGTTCATGAAATTCGAGGATAAATCTGAGACATCCTCAAGCCATGGTGGACTAAGTGCTGCAGGAGCTGTACCTGTCCCTCAGCTTCCAAAATTGCAGGACAATGTGGCCAACACTATGTTCTTCGTCTGA 2751 0.4264 MDSFDADTNGNGNGKEESLPPPPPVVPSDVVPLKAEEVIPSPPEPVKKKITRLPIARRGLGSKGNKIPLLTNHFNVNIGNNDGFFFQYSVSFAYEDGTPVEAKGVGRKIMDRVQETYASDLNGKQFAYDGEKSLFTIGSLPQNKLEFEIVLEDVTSNRNNGNRSPDANGDNDSDKKRVRRPYHAKTFKVEISFATKVPMYAIANALRGQETDNFQEAVRVLDIILRQHAAKQGCLLVRQNFFHNDPKNFADVGGGVLGCRGFHSSFRATQSGLSLNIDVTTTMIIQPGPVVDFLISNQNVRDPFTLDWAKAKRTLKNLRVKTHPSNQEFKISGLSEVPCKELTFTLKKRDGDGTEEMTVLDYFTNVRKIDLRYSADLPCINVGRPKRPTYFPIELCELVSLQRYTKSLSTLQRASLVEKSRQKPQERMRILSDALKTSNYGAEPLLQSCGITISTGFTQVEGRVLPAPRLKFGNGEDFNPRNGRWNFNNKKFVQPTKIEKWAVANFSARCDVRGLVRDIIRIGNMKGIMIDQPFDVFEENPQFRRAPPMVRVEKMFEDIQSKLPGAPQFLLCLLPDRKNCDIYGPWKKKNLADYGIINQCMCPLRVNDQYLGNIMLKINAKLGGLNSLLGVESTPSLPIVSKAPTLILGMDVSHGSPGQTDIPSIAAVVSSRQWPLISKYRACVRTQSAKVEMIDNLFKKVSDTEDEGIIRELLLDFYNSSGKRKPDNIIIFRDGVSESQFNQVLNIELDQIIEACKFLDEKWNPKFAVIVAQKNHHTRFFQPNAPENVPPGTVIDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEIGFSPDELQELVHSLSYVYQRSTTAISVVAPVCYAHLAATQLGQFMKFEDKSETSSSHGGLSAAGAVPVPQLPKLQDNVANTMFFV 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02627 916 MobiDBLite consensus disorder prediction 1 15 - -
Trre5g02627 916 SUPERFAMILY PAZ domain 282 440 IPR036085 GO:0005515
Trre5g02627 916 Gene3D paz domain 281 404 - -
Trre5g02627 916 Pfam Argonaute linker 1 domain 237 285 IPR014811 -
Trre5g02627 916 CDD Piwi_ago-like 444 871 IPR045246 -
Trre5g02627 916 CDD PAZ_argonaute_like 287 399 - -
Trre5g02627 916 Gene3D - 636 916 IPR036397 GO:0003676
Trre5g02627 916 MobiDBLite consensus disorder prediction 1 29 - -
Trre5g02627 916 Pfam Argonaute linker 2 domain 426 472 IPR032472 -
Trre5g02627 916 ProSiteProfiles Piwi domain profile. 569 877 IPR003165 GO:0003676
Trre5g02627 916 FunFam Protein argonaute 7 282 404 - -
Trre5g02627 916 Pfam Piwi domain 570 877 IPR003165 GO:0003676
Trre5g02627 916 Pfam N-terminal domain of argonaute 66 225 IPR032474 -
Trre5g02627 916 MobiDBLite consensus disorder prediction 156 179 - -
Trre5g02627 916 Gene3D - 464 630 - -
Trre5g02627 916 ProSiteProfiles PAZ domain profile. 312 400 IPR003100 GO:0005515
Trre5g02627 916 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 46 879 - -
Trre5g02627 916 Pfam PAZ domain 291 416 IPR003100 GO:0005515
Trre5g02627 916 SUPERFAMILY Ribonuclease H-like 554 875 IPR012337 -
Trre5g02627 916 SMART DUF1785_2 235 287 IPR014811 -
Trre5g02627 916 SMART Piwi_a_2 569 877 IPR003165 GO:0003676
Trre5g02627 916 FunFam Protein argonaute 3 637 916 - -
Trre5g02627 916 Pfam Mid domain of argonaute 479 559 IPR032473 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02627 Trre-Chr5 20599818 20605367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02627 21 915 Eukaryotic Initiation Factors Gene Family AT1G48410 34.874 4.44e-170 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02627 K11593 - gmx:100820376 1606.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02627 5 20599818 20605367 Trre5g02627 5 20599818 20605367 ECH
Trre5g02627 5 20599818 20605367 Trre9g04668 9 53667360 53673638 PCT