Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02625 ATGGGTGCTTACAAATACGTTTCTGAGCTATGGCGCAAGAAACAATCAGATGTGATGAGATTCATGCAGCGTGTGAGGTGCTGGGAGTATCGTCAGCAATCTTCCATTGTTCGTCTCACTAGGCCTACTCGTCCTGACAAAGCTCGCCGTTTGGGTTACAAGGCCAAGCAGGGATATGTTGTTTACCGTGTTCGCGTCCGTAGAGGTGGCCGAAAGAGGCCAGTTTCCAAGGGTATTGTTTATGGTAAGCCAACAAACCAGGGAGTTACCCAACTTAAGTTTCAGAGGAGCAAGAGGTCAGTTGCTGAGGAGCGTGCTGGACGTAAGCTTGGTGGACTCAGGGTTCTTAACTCCTACTGGGTCAATGAGGATTCTACCTTCAAATATTTTGAGGTCATTTTGGTTGATGTTGCACACAGTGCTATAAGAAATGACCCAAGAATCAACTGGCTCACCAATCCTGTCCACAAACACAGGGAACTTCGTGGCCTCACATCTGCTGGGAAAGAAAACAGAGGTTTGACTGGAAAGGGGCATCGTTACCACAAAGCCCGCCCATCCCGCAGGGCCAACTGGAAGAGAAACAACACCCTTTCTCTTCGTCGTTACCGTTGA 615 0.4878 MGAYKYVSELWRKKQSDVMRFMQRVRCWEYRQQSSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVSKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTFKYFEVILVDVAHSAIRNDPRINWLTNPVHKHRELRGLTSAGKENRGLTGKGHRYHKARPSRRANWKRNNTLSLRRYR 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02625 204 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 195 IPR012678 GO:0003735|GO:0005840|GO:0006412
Trre5g02625 204 MobiDBLite consensus disorder prediction 161 204 - -
Trre5g02625 204 ProSitePatterns Ribosomal protein L15e signature. 46 69 IPR020925 GO:0003735|GO:0005840|GO:0006412
Trre5g02625 204 Gene3D Ribosomal protein l15e 1 204 IPR024794 GO:0003735|GO:0005840
Trre5g02625 204 MobiDBLite consensus disorder prediction 176 190 - -
Trre5g02625 204 FunFam Ribosomal protein L15 1 204 - -
Trre5g02625 204 SMART Ribosomal_L15e_2 2 193 IPR000439 GO:0003735|GO:0005840|GO:0006412
Trre5g02625 204 Pfam Ribosomal L15 2 191 IPR000439 GO:0003735|GO:0005840|GO:0006412
Trre5g02625 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 IPR000439 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02625 Trre-Chr5 20585165 20586565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02625 1 204 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 88.235 1.22e-122 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02625 K02877 - gmx:100798324 375.555