Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02624 ATGGGTCGCAGTTCAGAAGTGTGTCTGTCTTGTCTTCACAACTGTCGATTATTTCACTCTCACCGAACACAAACAGCCTCAACCTCCCCTAACTCTTTCTACAAGTTGATCTTTCATCAAAATGATTTCAATGTTTTGTATCTTCCTCCAAAGTTGAATCATATTATGTCAACCTTGATTGGTGAGAAAATCAATCTCGAGGATTCAGCGGGTGGGCGAACGGTTGTTACAATATCAAAAGTTCACGGTTCTTTTGCTTTTAAGGAAGGATGGGAGGTTTTCTCAAAGGAGCATGGGCTTGAAATTGGAGATATTGTGGTATTCAATTGCATTAGCAAGTTGAATTTTGATGTCAAGATCTATGATGAATCTGTGTGTGAAAGACTAGATTTTTCTATAAAAAGAAATGGGAGAAAGAGAGATAGAAGTGGTAAGTGTGTTGGACAAAATCGCATAGAAAACATTTCAGAAAATGACAATGAGGATCGAAGGGTTCAATCTAAGTGTACATCAGAACACATTGAAGACACATGTTACATAACAAGCCATATATATCAAAATGATGATCTAGTTGGTTTTAACAAAGATCCTATGTTGGAAGAAGTGTTGGGTACAGGGGATACCTCATATGCATCTAAACTATTATCGTTGGGGAGAAACAGTTCTCCTGGCGAGACAGACAAAAGCACATATGACGATAGTTCTGCTTTGATACATGGGCAAAATAAAGAGCACAAATCCATTATGTTCAATAGTGAAGCTCGAGAGTGCCAATTTGTTGAGAGCTTAGAGTTGCCAAAGGTTATTAAGGGAGAGTTTAATAAAGATAATGAGAGTCACTTTGAAACTTCTGGAGGAAACAATTCTGCTGGTGATTCAGCCAAACATGCCTCGCATGCTTCTGAACTTGAAACTTCTGGCAGAAACAATTCTGTTGGCGATTCAGGCAAAAGCCCATATGCCAAGAATTCTATTTTGAAACTTGAAGAAAACGAAGAGGGAAAATCCATCGTGTCCGAAAAGGAAATTCAAGAGTGCCAGTTTGCTGAAGGCTTAGAGTTGCCAAAGGTTGTTAAGGGAGAGTTTAATCAAGATAATGGCCTGCACTTTGAAACTGTTGCCACTGTCTCCTCTGTGGTGCTCACTGATAATGACCGTCTTAACACCAAACAGGTACCCAAAGATATCTCCAATCTCTTAAATGATCAAATTCACTTTGATGAAATGAAGGAAGTGCCGATGGAAATGACTCCCAAATTGGGCAGTTTCAATGACAAATTAAATGCAACAGGGTCGCCAAAGGTTATTAAGGGAGAGTTTAATGAAGATGAAACTGCGGAAACTGTCACCTGTGTAGTGCTTACTGATAATCATTATCTTAAATTGTCAATATGCCTGTCGTTATCTCGAACGGAGAGGATGGTGGTGTTCCTTAGGGATCCACTGGGGAGATTGTGGCCGGTCTTTTACCTTAAAAAAACTTGGTTGACAAGTGGATGGTTAGATTTTCAAAGAGCAAATAATATTAAACCAGGTGATGTGTGTGTTTTTCGGGTTGTGAACAAGTTTGAACGTATCATTTCTGTACATATAAACCACAAGTGA 1605 0.39 MGRSSEVCLSCLHNCRLFHSHRTQTASTSPNSFYKLIFHQNDFNVLYLPPKLNHIMSTLIGEKINLEDSAGGRTVVTISKVHGSFAFKEGWEVFSKEHGLEIGDIVVFNCISKLNFDVKIYDESVCERLDFSIKRNGRKRDRSGKCVGQNRIENISENDNEDRRVQSKCTSEHIEDTCYITSHIYQNDDLVGFNKDPMLEEVLGTGDTSYASKLLSLGRNSSPGETDKSTYDDSSALIHGQNKEHKSIMFNSEARECQFVESLELPKVIKGEFNKDNESHFETSGGNNSAGDSAKHASHASELETSGRNNSVGDSGKSPYAKNSILKLEENEEGKSIVSEKEIQECQFAEGLELPKVVKGEFNQDNGLHFETVATVSSVVLTDNDRLNTKQVPKDISNLLNDQIHFDEMKEVPMEMTPKLGSFNDKLNATGSPKVIKGEFNEDETAETVTCVVLTDNHYLKLSICLSLSRTERMVVFLRDPLGRLWPVFYLKKTWLTSGWLDFQRANNIKPGDVCVFRVVNKFERIISVHINHK 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02624 534 Gene3D - 24 126 IPR015300 -
Trre5g02624 534 MobiDBLite consensus disorder prediction 280 295 - -
Trre5g02624 534 SUPERFAMILY DNA-binding pseudobarrel domain 465 530 IPR015300 -
Trre5g02624 534 ProSiteProfiles B3 DNA-binding domain profile. 476 534 IPR003340 GO:0003677
Trre5g02624 534 SMART B3_2 450 533 IPR003340 GO:0003677
Trre5g02624 534 SMART B3_2 33 124 IPR003340 GO:0003677
Trre5g02624 534 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 47 531 IPR044837 -
Trre5g02624 534 MobiDBLite consensus disorder prediction 303 318 - -
Trre5g02624 534 Gene3D - 440 534 IPR015300 -
Trre5g02624 534 SUPERFAMILY DNA-binding pseudobarrel domain 29 126 IPR015300 -
Trre5g02624 534 CDD B3_DNA 472 518 IPR003340 GO:0003677
Trre5g02624 534 Pfam B3 DNA binding domain 466 523 IPR003340 GO:0003677
Trre5g02624 534 Pfam B3 DNA binding domain 46 122 IPR003340 GO:0003677
Trre5g02624 534 MobiDBLite consensus disorder prediction 276 320 - -
Trre5g02624 534 CDD B3_DNA 46 122 IPR003340 GO:0003677
Trre5g02624 534 ProSiteProfiles B3 DNA-binding domain profile. 31 124 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02624 Trre-Chr5 20576832 20580425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02624 20 127 B3 DNA Binding Superfamily AT4G01580 27.027 2.29e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g02624 B3 9.1e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02624 - - psat:127084256 540.036