LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g02609	ATGGTAGCTGCGGTTGCAAGAAAACCTGGTGAAGCATTGGTTATAGAAGAGATCATTGTGGCGCCACCAATGTCTCGTGAGGTTCGGATTCGTATTCTATGTACATCTCTTTGCCACAGTGACATCAATGTTTGGAAGATGCAGGAACATCCTGGCATTTTCCCAAGAATATTTGGTCATGAGGCAGCTGGGGTTGTGGAAAGTGTAGGGAAGGATGTAACCGAAGTTACAAAAGGAGATACGGTTATTCCAATTTTCCTACCAGATTGCGGGGAGTGTATAGATTGCAAATCAACCAAGAGCAACTGTTGTACTAATTTCCCATTCAAGGTGTCTCCTTGGATGCCTAGACATGAGAGCACTAGATTCACAGATCTAAACGGAGAGATCATATACCATTTCATGTTTGTTTCAAGTTTCAGCGAGTACACTGTGGTCGACATCGCCAATATAACAAAGATTGATCCACAAATCCCTCCTGATAGGGCTTGTCTTCTCAGTTGTGGTGTTTCAACAGGGGTAGGTGCTGCTTGGAGAACAGCAAGTGTGGAGCCAGGATCTACAGTGGCTATTTTTGGGCTTGGATCTGTTGGATTGGCGGTTGCAGAGGGAGCTAGGGTTTGTGGAGCAACTAGAATTATTGGTGTGGATGTCAACCATAAAAAATTTGAAATTGGAAAAAAGTTTGGACTCACAGACTTCGTCCATGCTGTTGAATGTGGAAACAAACCTGTGAGCCAGATTATCATAGAGATGACTGATGGTGGAGCAGATTATTGCTTTGAATGTGTTGGTATGACATCATTGGTGCATGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGAAAAACAATTGTTGTGGGAGTGGACAAGCCAGGAGCTAGATTGAGCCTCAGTTCTAGTGAGGTCCTTCATGATGGAAAGAGCCTTATGGGATCTGTGTATGGAGGACTCAAACCCAAATCTCATGTGCCAATTCTTCTTAAACGTTACATGGACAAGGAACTGCAGTTGGATGAATTTGTGACTCATGAGGTGGAATTTAAGGACATCAATAAAGCATTTGACCTATTGAATAAAGGACAGTGTCTTCGATGTGTGATTTGGATGGAAAAATGA	1119	0.4298	MVAAVARKPGEALVIEEIIVAPPMSREVRIRILCTSLCHSDINVWKMQEHPGIFPRIFGHEAAGVVESVGKDVTEVTKGDTVIPIFLPDCGECIDCKSTKSNCCTNFPFKVSPWMPRHESTRFTDLNGEIIYHFMFVSSFSEYTVVDIANITKIDPQIPPDRACLLSCGVSTGVGAAWRTASVEPGSTVAIFGLGSVGLAVAEGARVCGATRIIGVDVNHKKFEIGKKFGLTDFVHAVECGNKPVSQIIIEMTDGGADYCFECVGMTSLVHEAYASCRKGWGKTIVVGVDKPGARLSLSSSEVLHDGKSLMGSVYGGLKPKSHVPILLKRYMDKELQLDEFVTHEVEFKDINKAFDLLNKGQCLRCVIWMEK	372

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g02609	372	Gene3D	-	4	365	-	-
	Trre5g02609	372	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	59	73	IPR002328	GO:0008270\|GO:0016491
	Trre5g02609	372	Pfam	Zinc-binding dehydrogenase	197	317	IPR013149	-
	Trre5g02609	372	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	158	333	IPR036291	-
	Trre5g02609	372	FunFam	S-(hydroxymethyl)glutathione dehydrogenase	173	313	-	-
	Trre5g02609	372	PANTHER	ALCOHOL DEHYDROGENASE	3	368	-	-
	Trre5g02609	372	Pfam	Alcohol dehydrogenase GroES-like domain	26	153	IPR013154	-
	Trre5g02609	372	Gene3D	-	173	313	-	-
	Trre5g02609	372	SUPERFAMILY	GroES-like	2	181	IPR011032	-
	Trre5g02609	372	SUPERFAMILY	GroES-like	321	369	IPR011032	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g02609	Trre-Chr5	20420983	20424043	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g02609	26	168	Monolignol Biosynthesis Gene Families	AT4G37970	29.167	1.68e-11	62.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g02609	K00121		-	gmx:100817521	654.44

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