Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02609 ATGGTAGCTGCGGTTGCAAGAAAACCTGGTGAAGCATTGGTTATAGAAGAGATCATTGTGGCGCCACCAATGTCTCGTGAGGTTCGGATTCGTATTCTATGTACATCTCTTTGCCACAGTGACATCAATGTTTGGAAGATGCAGGAACATCCTGGCATTTTCCCAAGAATATTTGGTCATGAGGCAGCTGGGGTTGTGGAAAGTGTAGGGAAGGATGTAACCGAAGTTACAAAAGGAGATACGGTTATTCCAATTTTCCTACCAGATTGCGGGGAGTGTATAGATTGCAAATCAACCAAGAGCAACTGTTGTACTAATTTCCCATTCAAGGTGTCTCCTTGGATGCCTAGACATGAGAGCACTAGATTCACAGATCTAAACGGAGAGATCATATACCATTTCATGTTTGTTTCAAGTTTCAGCGAGTACACTGTGGTCGACATCGCCAATATAACAAAGATTGATCCACAAATCCCTCCTGATAGGGCTTGTCTTCTCAGTTGTGGTGTTTCAACAGGGGTAGGTGCTGCTTGGAGAACAGCAAGTGTGGAGCCAGGATCTACAGTGGCTATTTTTGGGCTTGGATCTGTTGGATTGGCGGTTGCAGAGGGAGCTAGGGTTTGTGGAGCAACTAGAATTATTGGTGTGGATGTCAACCATAAAAAATTTGAAATTGGAAAAAAGTTTGGACTCACAGACTTCGTCCATGCTGTTGAATGTGGAAACAAACCTGTGAGCCAGATTATCATAGAGATGACTGATGGTGGAGCAGATTATTGCTTTGAATGTGTTGGTATGACATCATTGGTGCATGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGAAAAACAATTGTTGTGGGAGTGGACAAGCCAGGAGCTAGATTGAGCCTCAGTTCTAGTGAGGTCCTTCATGATGGAAAGAGCCTTATGGGATCTGTGTATGGAGGACTCAAACCCAAATCTCATGTGCCAATTCTTCTTAAACGTTACATGGACAAGGAACTGCAGTTGGATGAATTTGTGACTCATGAGGTGGAATTTAAGGACATCAATAAAGCATTTGACCTATTGAATAAAGGACAGTGTCTTCGATGTGTGATTTGGATGGAAAAATGA 1119 0.4298 MVAAVARKPGEALVIEEIIVAPPMSREVRIRILCTSLCHSDINVWKMQEHPGIFPRIFGHEAAGVVESVGKDVTEVTKGDTVIPIFLPDCGECIDCKSTKSNCCTNFPFKVSPWMPRHESTRFTDLNGEIIYHFMFVSSFSEYTVVDIANITKIDPQIPPDRACLLSCGVSTGVGAAWRTASVEPGSTVAIFGLGSVGLAVAEGARVCGATRIIGVDVNHKKFEIGKKFGLTDFVHAVECGNKPVSQIIIEMTDGGADYCFECVGMTSLVHEAYASCRKGWGKTIVVGVDKPGARLSLSSSEVLHDGKSLMGSVYGGLKPKSHVPILLKRYMDKELQLDEFVTHEVEFKDINKAFDLLNKGQCLRCVIWMEK 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02609 372 Gene3D - 4 365 - -
Trre5g02609 372 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 59 73 IPR002328 GO:0008270|GO:0016491
Trre5g02609 372 Pfam Zinc-binding dehydrogenase 197 317 IPR013149 -
Trre5g02609 372 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 333 IPR036291 -
Trre5g02609 372 FunFam S-(hydroxymethyl)glutathione dehydrogenase 173 313 - -
Trre5g02609 372 PANTHER ALCOHOL DEHYDROGENASE 3 368 - -
Trre5g02609 372 Pfam Alcohol dehydrogenase GroES-like domain 26 153 IPR013154 -
Trre5g02609 372 Gene3D - 173 313 - -
Trre5g02609 372 SUPERFAMILY GroES-like 2 181 IPR011032 -
Trre5g02609 372 SUPERFAMILY GroES-like 321 369 IPR011032 -
Trre5g02609 372 FunFam Alcohol dehydrogenase 6 4 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02609 Trre-Chr5 20420983 20424043 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02609 26 168 Monolignol Biosynthesis Gene Families AT4G37970 29.167 1.68e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02609 K00121 - gmx:100817521 654.44