Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02608 ATGGCACCAACAGCAACAAATGAAGGAGAAGGGAAACCTATAAGATGTAAAGCGGCGGTTGCAAGAAGACCTGGTGAGCCACTGGTGATTGAAGAGATCATTGTGGCACCACCAATGCCTCGTGAGGTTCGGATTCGTATTCTATGTACATCTCTTTGCTATGTTGATCTCGCTTTTTCCAACATGCAGGACCCTCCTGGCTTTTTCCCGAGAATTCTTGGTCATGAAGCAATTGGGGTTGTGGAAAGTGTAGGGAAGGGTGTAACCGAAGTTACAAAAGGAGATACGGTTATTCCGATATTCCTACCAGATTGTGGGGAATGTAGAGATTGCAAATCAACCAAGAGCAACCTTTGTACTAATTTCCCATTCAAAGTTTCTCCTTGGATGCTAAGAAATGAGAACACCAGATTCACTGACCTAAACGGAGAGTTCATATATCATTTCATGTCTGTTTCAAGCTTCAGCGAGTACACTGTGGTTGACGTTGCCAATGTAACAAAGATTGACTCAAATATTCCTCCCGACAGGGCGTGCCTTCTCAGTTGTGGTATCGGAGCAGGGGTAGGTGCTGCTTGGAAAACAGCAGGTGTGGAGCCAGGGTCTACAGTAGCTATTTTCGGACTAGGATCTATTGGATTAGCAGTTGCCGAGGGAGCCAGACTTTGTGGAGCAACTAAGATTATCGGTGTAGATGTCAACCCTGAAAAATCCGAAGTTGGAAAGAAGTTTGGGATCACAGACTTTGTGCATGCCGGAGAATCTAAGAACAAACCTGTGAGCCAGGTTATCTTAGAGATGACTGATGGCGGAGCAGATTATTGCTTTGAATGTGTCGGTATGGCGTCGTTGATGCATGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGAAAAATAATTGTCTTAGGACTGGACAAACCTGAAGCAAGGTTGAGCCTCAATTGTAGTGAGGTCCTTCATGATGGGAAGACACTTCAGGGAAATTTATTTGGAGGTCTCAAACCTAAGTCTCATGTATCTGTTCTACTTAAACGATACATGGACAAGGAACTGCAGTTGGATCAATTTCTCACTCATGAAGTGGAGTTTAAGGACATCAATAAAGCTTTTGACTTGTTGAAAAATGGACAATGTATTCGATGTGTGATTTGGATGGACAAATGA 1164 0.4364 MAPTATNEGEGKPIRCKAAVARRPGEPLVIEEIIVAPPMPREVRIRILCTSLCYVDLAFSNMQDPPGFFPRILGHEAIGVVESVGKGVTEVTKGDTVIPIFLPDCGECRDCKSTKSNLCTNFPFKVSPWMLRNENTRFTDLNGEFIYHFMSVSSFSEYTVVDVANVTKIDSNIPPDRACLLSCGIGAGVGAAWKTAGVEPGSTVAIFGLGSIGLAVAEGARLCGATKIIGVDVNPEKSEVGKKFGITDFVHAGESKNKPVSQVILEMTDGGADYCFECVGMASLMHEAYASCRKGWGKIIVLGLDKPEARLSLNCSEVLHDGKTLQGNLFGGLKPKSHVSVLLKRYMDKELQLDQFLTHEVEFKDINKAFDLLKNGQCIRCVIWMDK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02608 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 173 348 IPR036291 -
Trre5g02608 387 Pfam Alcohol dehydrogenase GroES-like domain 41 168 IPR013154 -
Trre5g02608 387 SUPERFAMILY GroES-like 337 384 IPR011032 -
Trre5g02608 387 SUPERFAMILY GroES-like 10 190 IPR011032 -
Trre5g02608 387 PANTHER ALCOHOL DEHYDROGENASE 11 383 - -
Trre5g02608 387 FunFam S-(hydroxymethyl)glutathione dehydrogenase 188 328 - -
Trre5g02608 387 Gene3D - 19 380 - -
Trre5g02608 387 Gene3D - 188 328 - -
Trre5g02608 387 FunFam Alcohol dehydrogenase 6 19 199 - -
Trre5g02608 387 Pfam Zinc-binding dehydrogenase 212 332 IPR013149 -
Trre5g02608 387 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02608 Trre-Chr5 20411475 20414836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02608 41 334 Monolignol Biosynthesis Gene Families AT4G37990 23.649 5.23e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02608 K00121 - gmx:100817521 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02608 5 20411475 20414836 Trre9g04657 9 53544341 53547331 PCT