Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02605 ATGGCGCATAGGTTGCTCAGAGACCACGAAGCCGACGGTTGGGAACGTTCTGACTTCCCCATCATCTGCGAATCATGCCTCGGTGACAGCCCCTATGTTCGAATGACGAGGGCTGAGTATGACAAAGAGTGCAAGATTTGTACAAGGCCATTTACTGTTTTTAGATGGAGACCTGGTCGTGATGCAAGATATAAGAAAAGTGAGATCTGCCAGACATGTAGTAAATTGAAAAATGTTTGTCAAGTATGCCTTTTGGATCTTGAATATGGACTTCCAGTCCAAGTCCGTGACACAGCTCTCAGTATCAGTTCTAATGATGCCATTCCAAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCATGATCGCAAGGCTAGAGCTGGTATAGATTATGAGTCCTCGTTTGGTAAAGCACGCCCAAATGACACTATCTTGAAGCTTCAAAGGACAACACCTTATTACAAAAGAAACCGGGCACATATTTGCAGTTTCTACATAAGGGGTGAGTGTACTAGAGGAGCCGAGTGCCCTTACAGACACGAGATGCCAGTAACTGGGGAATTGTCTCAACAAAATATCAAAGATCGTTATTATGGGGTTAATGATCCGGTTGCTATGAAGCTACTTGGCAAGGCAGGAGAAATGACATCTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACTCTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGACTTGCGGGACAACTTCTATGCCCATGGAGAAATTGAGTCTGTCAAAATGGTTCTTCAACGGGCTTGTGCTTTTGTAACCTATACAACCAGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCTCAAACAAACTGGTTATTAAGGGCCAAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGGCAGCAAAACCTGAGTCTGACGGTTCTGATCAAGCAAGGCAACAAGCCTCTGTGGCTCATAGTGGGTTGTTGCCTCGTGCAGTTATATCACAGCAGCAGAACCATGACCAAACCCAAGGAGGAATGCTTTACTATAACAATCCACCTCCTCCTCAGCAGGAAAGAAGCTATTACCCTTCAATGGATCCCCAAAGAATGGGTGCTCTTATTCCATCTCAAGACGGTGCTCCTGGTGGACCTTCTGGATCTGGGGAGAACAAACCCGGTTCTGAAAAGCAGCAAATGCAACATTATGGTCACCCAATGATGCCACCTCCACATGGCCAATATCAGCATCAGTACTATCCTCCATACGGTGGTTACATGCATCCAGTTCCCCCTTATCAACATTACCCACCACCACCATACAATGCTGCAATGCCTCCACCCCAGCCACCTGCTGCAAATCACCCCTATCAACATTCTATGCAACCAGGGTCTTCACAAACAGTGCCTGGACCGGTTGGGTCTGCACCGCCCGAAACTGGAACATCAACATCAGGGTCACAGCAACAATAA 1464 0.4679 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSNDAIPKSDVNREYFAEEHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMTSLEAPEDESIKTLYVGGLDARVTEQDLRDNFYAHGEIESVKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGQRLKLMWGRPQAAKPESDGSDQARQQASVAHSGLLPRAVISQQQNHDQTQGGMLYYNNPPPPQQERSYYPSMDPQRMGALIPSQDGAPGGPSGSGENKPGSEKQQMQHYGHPMMPPPHGQYQHQYYPPYGGYMHPVPPYQHYPPPPYNAAMPPPQPPAANHPYQHSMQPGSSQTVPGPVGSAPPETGTSTSGSQQQ 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02605 487 MobiDBLite consensus disorder prediction 435 451 - -
Trre5g02605 487 Pfam Torus domain 150 194 IPR032297 -
Trre5g02605 487 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Trre5g02605 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Trre5g02605 487 SMART rrm1_1 229 297 IPR000504 GO:0003723
Trre5g02605 487 MobiDBLite consensus disorder prediction 334 408 - -
Trre5g02605 487 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 379 IPR039171 GO:0003723
Trre5g02605 487 SUPERFAMILY RNA-binding domain, RBD 221 308 IPR035979 GO:0003676
Trre5g02605 487 MobiDBLite consensus disorder prediction 300 321 - -
Trre5g02605 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 294 IPR000504 GO:0003723
Trre5g02605 487 MobiDBLite consensus disorder prediction 435 487 - -
Trre5g02605 487 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Trre5g02605 487 Gene3D - 213 309 IPR012677 -
Trre5g02605 487 MobiDBLite consensus disorder prediction 334 353 - -
Trre5g02605 487 Gene3D - 149 212 - -
Trre5g02605 487 CDD RRM_RBM22 227 300 - -
Trre5g02605 487 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Trre5g02605 487 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Trre5g02605 487 MobiDBLite consensus disorder prediction 452 487 - -
Trre5g02605 487 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02605 Trre-Chr5 20401572 20406155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02605 220 289 Eukaryotic Initiation Factors Gene Family AT1G49760 33.333 6.89e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02605 K12872 - gmx:100779917 815.839