Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02602 ATGTCAAGTCGAGGCGGAAGGGATCGGTCTAGGAGGGATTATCCTTCAAGATATGAAGACAATAAGGGTAATGGTGGCACCGGGCGCGGTGGTGGTGGCGGCGGTAACAGTAGCAATCCTCCTTCCAGGCACCTTTGGGTTGGGAATCTATCACACAATATTGTAGAGGATGAACTTGCTCATCCTTTTATACGGTTTGGACCGCTGGAAAAAGTTGCATTTCAACCCGGTCGAAGCTATGCTTTCATTAACTTTGAAGTGGATGAAGATGCCATTGATGCTATGAGATCACTGCAAGGTTTTCCTCTTGCTGGCAATCCGCTTAGAATCGAGTTTGCAAAGGCGGACAAGCCATCAACAGTAACACGTGATGAAGATTATTCACGTGATGAACGAAGACCAGCATTAAGGGGATCTCCTTTCTCTCAAAGAGAGATTAGAGGACGTCATGGTAGTCCTGAACCAAATTATTCTGACAAATCCAAGTTAAGTGATAAAAATCCAGAGCCCAGTGAGGTTTTGTGGATTGGGTTCCCGGCTCAGTTGAAGGTGGATGAATTAATTTTGGGAAGGGCTTTTTCTCCATTTGGTGAGATTGAGAAGATTTCGGCATTTCCAGGTCGGAGTTATGCATTTGTTCGCTATAGAAATCAGGCTTCAGCATGCAGAGCATTGGATGCTCTGAATGGCAAGTTATTTGGGAATCCCCGTGTTCATATCACTTTTGCCAAGAGTGAATCTGGTTCAAGCAGTGGGAAGAGCTCATTTAATGGCCCTCGATCCCCATCATACAAGTCAGGTGGCCGTGGTGGATCTTCAGAGAACTTCAGGCAGGATAGGAGCTTTGGCGGGGAGCAGAACATTAGTTCTCCAAATATGTTTGTGAATTGGGATTCTCGAGATTCTGATGCTTATGATTTTAACAACAGGGGTTCTTCATGGGCTGGTGGAGCTAACGCATATGGGCAAAGGAAAATTGGAGAGAAGGGCACTCCACTTGGAGTAGCACAAGAATTTTATGAACATATAAGTAGTCCATCAAGAGAAAGACACTTTCATCAGGGTGATTTTCCACAGAAATATCCTCAAAGGGGTGCATTCTTTGAAGATCCGCAGGGCTTTCCTGAAGATGCTCCCTATCTACACGTGGCTAAAAAGCTCAAGAGTGATTCTTCTCCTCCTGAGAAGGAGCTTCCAGAGTATGCTTTCACCGAGTTAGAAAGACAAAAACATGTTTTCCCAAGATTATTACCTGATTATCCTCATCATGAACCTTTTGATAAAAGCTTTGATGCTGGAAATTTCACTTACGGACAAACATTTAATCACCCACCAAATTCACCTCTGGTTCGCATAGATAGACATGAAGGCCGGAAACCTTATGATAGTTTCCAAATGGGTCCTGGTGCTCTCCAATCAAATTTTGTTGAGAAAAAAAGATTTACACCTGAACCTGATAATTCATCTTCATCTGAGTGGAAATGGGAAGGAACCATTGCTAAAGGCGGGACCCCTATTTGTCGTGCTCGCTGCTTCCCTGTAGGGAAAGTCCTAGATATCGCATTACCAGAGTTCTTAGATTGCACTGCAAGAACTAGTCTAGACATGCTGTCCAAGCATTACTACCAAGCTGTTGGAGTTTGGGTTGTTTTCTTTGTGCCGGGAAGCGATGCTGACATTGAATTCTACAATGAGTTTATGCATTATCTGGAGGAAAAACAGCGGGCTGCAGTTTCCAAGGTGGATGACAAGACCACCTTATTTCTCGTACCTCCATCAGATTTCTCAGAGAAAGTGTTAAAGGTACCTGGTAAGTTGAGCATATCTGGTGTTATTCTGAGGTTGGAATATCCTGGTTTGAACCAAGGTCCTATGCACATTGAAAGAGAAATGAAAAACGAAAACCAATCGTCCTATAATGAGAACATATTGTATCCAAATTCGTCTTATCCATCCGTACGCATACCTCCAAACCCACCATCTATTTCAGAATTGGGTAATTCTGGTATCAGCAATCTTTCATTTCCGGGAAACAAATTTGAAGCAGCTCCATTAGTTTCTGATTCAGCTCGTTCTGCGGGTGGCATGCCTGAGTCCTATGATGAAAGAAGTCGCTACTATCCATCCAACCAGCCGCGGACATCTGTACCAAACTGGCCTTCTCAAAATCCACAAAATTTAGTCTCTAATAGAACTTTACCTTCACATCAATTCAGTGGTGCTGTTGAACCTATTGCCGAGGAGCGTCCTCCCATCATGAATGTAAGTTCACATCAACATTTCGGTGGAAATTCTGGTATTCCATTTGGCGGTAATAACATGTCATCATATCCAGAAATGAGAAATTTTGATCCTTCAACCCCTGTGGGATCCCTGCAGCCAGAACAGCTTGCACAACTAGCTGCATCTCTTCTTGAGAAGCAGAGGCAATTGGGAAGCTCTATGAGCACATCTGCAATGAGTGATCCAAGACAGAACAGATTTAATGAGTCTGAAACCTCATCCAGACAATCATATGCTGCAGAAAACAACCCGGCGAGTTCCGAACTCTCGACATCTCAGTTTGGTCATGTTCTACAGTTGCAAAAGCAACTTCAGATGATGCCAAATGTGCCTCAGTTGTCACAGATGGTTCAGAGAGAACCACAAAGAGAGGTCAATGGAAATCAGCAATTGGCAGATAATAGCTTGCAGGAAGGTGGAGACGCAGATACACAGAAACGTTTAGAAGCAACCCTAAAGCTGGCTGCTACTCTTCTTCAGCAAGTCCATCAAGGAAACGGGAATTGA 2790 0.438 MSSRGGRDRSRRDYPSRYEDNKGNGGTGRGGGGGGNSSNPPSRHLWVGNLSHNIVEDELAHPFIRFGPLEKVAFQPGRSYAFINFEVDEDAIDAMRSLQGFPLAGNPLRIEFAKADKPSTVTRDEDYSRDERRPALRGSPFSQREIRGRHGSPEPNYSDKSKLSDKNPEPSEVLWIGFPAQLKVDELILGRAFSPFGEIEKISAFPGRSYAFVRYRNQASACRALDALNGKLFGNPRVHITFAKSESGSSSGKSSFNGPRSPSYKSGGRGGSSENFRQDRSFGGEQNISSPNMFVNWDSRDSDAYDFNNRGSSWAGGANAYGQRKIGEKGTPLGVAQEFYEHISSPSRERHFHQGDFPQKYPQRGAFFEDPQGFPEDAPYLHVAKKLKSDSSPPEKELPEYAFTELERQKHVFPRLLPDYPHHEPFDKSFDAGNFTYGQTFNHPPNSPLVRIDRHEGRKPYDSFQMGPGALQSNFVEKKRFTPEPDNSSSSEWKWEGTIAKGGTPICRARCFPVGKVLDIALPEFLDCTARTSLDMLSKHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLEEKQRAAVSKVDDKTTLFLVPPSDFSEKVLKVPGKLSISGVILRLEYPGLNQGPMHIEREMKNENQSSYNENILYPNSSYPSVRIPPNPPSISELGNSGISNLSFPGNKFEAAPLVSDSARSAGGMPESYDERSRYYPSNQPRTSVPNWPSQNPQNLVSNRTLPSHQFSGAVEPIAEERPPIMNVSSHQHFGGNSGIPFGGNNMSSYPEMRNFDPSTPVGSLQPEQLAQLAASLLEKQRQLGSSMSTSAMSDPRQNRFNESETSSRQSYAAENNPASSELSTSQFGHVLQLQKQLQMMPNVPQLSQMVQREPQREVNGNQQLADNSLQEGGDADTQKRLEATLKLAATLLQQVHQGNGN 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02602 929 Gene3D - 34 122 IPR012677 -
Trre5g02602 929 SUPERFAMILY RNA-binding domain, RBD 184 272 IPR035979 GO:0003676
Trre5g02602 929 SUPERFAMILY RNA-binding domain, RBD 29 124 IPR035979 GO:0003676
Trre5g02602 929 MobiDBLite consensus disorder prediction 875 905 - -
Trre5g02602 929 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 245 IPR000504 GO:0003723
Trre5g02602 929 MobiDBLite consensus disorder prediction 875 900 - -
Trre5g02602 929 CDD SPOC_FPA-like 494 613 - -
Trre5g02602 929 FunFam RNA recognition motif (RRM)-containing protein 158 251 - -
Trre5g02602 929 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 237 IPR000504 GO:0003723
Trre5g02602 929 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 108 IPR000504 GO:0003723
Trre5g02602 929 MobiDBLite consensus disorder prediction 809 852 - -
Trre5g02602 929 MobiDBLite consensus disorder prediction 1 19 - -
Trre5g02602 929 MobiDBLite consensus disorder prediction 116 167 - -
Trre5g02602 929 MobiDBLite consensus disorder prediction 704 726 - -
Trre5g02602 929 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 115 IPR000504 GO:0003723
Trre5g02602 929 SMART rrm1_1 44 111 IPR000504 GO:0003723
Trre5g02602 929 SMART rrm1_1 173 241 IPR000504 GO:0003723
Trre5g02602 929 MobiDBLite consensus disorder prediction 761 791 - -
Trre5g02602 929 MobiDBLite consensus disorder prediction 244 295 - -
Trre5g02602 929 MobiDBLite consensus disorder prediction 1 43 - -
Trre5g02602 929 Pfam SPOC domain 488 603 IPR012921 -
Trre5g02602 929 PANTHER RNA RECOGNITION MOTIF-CONTAINING 36 923 - -
Trre5g02602 929 MobiDBLite consensus disorder prediction 689 726 - -
Trre5g02602 929 Gene3D - 145 287 IPR012677 -
Trre5g02602 929 MobiDBLite consensus disorder prediction 115 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02602 Trre-Chr5 20372836 20383290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02602 36 267 Eukaryotic Initiation Factors Gene Family AT1G22760 28.807 6.14e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02602 - - gmx:100816831 1228