Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02578 ATGTATATAGCATTTAGTTTCTATCTTTTGATTGGATTGCTATACATTTCGTTACTCTTTTTATCTTTTTTATATGCTAGGTCTGAATCTCAATTCATCAAAGACATTGTTGAAGACATTTTGCAAAGACTGAATCTCGTACACCCAATTGAATTGAAGGGAGTGGTTGGAATTGAGCAAAATTATGAAGGAGTTAAATCACTATTGAAAATGGACTCGAGAGAAGTTCGAGTGATTGGGATATGGGGCATGGGTGGCATAGGTAAGACCACCCTAGCAATTGCTTTATGTGCCAAATTGTCTTCTCAATTTGAAGGTCATTGTTTCTTGGCAAATGTAAGGGAACAAATAGAGAAGAATAATATAGATTTCTTGCGCAACAAGCTTTTTTCAGAGCTATTAGAGGAAGAAAATCTTCATGTTAATGTACCAAAAGTTAAATACCATCGTGTGACCAATAGGCTTAGACGAAAAAAAGTTCTTGTTGTTTTAGATGACGTTGCTACTTCGGAACAATTAGAAGATCTAATCGGTGATAATGATTGTTTGGGACCAGGAAGTAGAGTGATTGTAACCACTAGAGATAAGCACATAATTAACCATGTTAATGAAATATATGAGGTCAAGGAATTGAACAAACACGACTCTCTTCGGCTTTTCTGTTTGAGTGCATTCAAAGAAAAACATCTTATAAGTGGATATGAAAAGCTCTCTGAAAGTGTAATTGCCTATTGCAAAGGCAATCCTTTGGCTTTAAAAGTTTTAGGTGCGCGTCTTTGTTCAAGAAGTATAGAAGCATGGAAAAGTGAATTGGAAAAGCTCAAGATGATTCCAAACGTGAAAATTCAAAATGTGTTGAAATTGAGTTATGATGACTTAGATAGTGATCAACAAAATATATTCTTAGACATAGCATGCTTTGTCAAAGAAGAATCTAGAGATCGCGTGACAAATCTATTGGAAGCTTGTCATTTCCACCCAGTTATTGGAATTGAAGATCTTGTAGAAAAATCTCTTGTAACCATTTCAAATAAGGGTACGATACAAATGCATGACTTAATACAAGAAATGGGCCAGAATATTGTTCATCAAGAATCCCCTAAAGACCCTGGAAGCAGAACTCGATTGTGGGATCCCAATGAAGTGTATGATGTACTAAAATATAATAAGGGAACTAAAGCTGTAGAAGGAATAACTTTAGATATATCTAAAGTTGAGGATCTATATTTAAAGTCTAATTCCTTTACAGAAATGTCTGAGATGAGATTTCTCAAATTCTATTATGGAAAGTGCAACAGTACAAGTAATATATATCTTCCGAAAAACGGTCTAGATTCATTGTCTGATAAATTGAGGTACCTTGAATGGCATAGATATTGTCTGAAGTCTTTGCCATCACAATTTCGTGCTAATTTGCTTGTTGAGCTTTCCATGCCTTACAGCAACCTTCAAAAGCTCTGGGAAGGAGTTCAGAATCTTGCGAATTTAAAGGAAATTGACCTTAGATTCAGCAATGAGTTGGTTGAGGTCCCAGACTTGTCTAAGGCTACAAATTTGGAATGGTTGGCACTTACTGGGTGTAGAAATTTGCGCGAAATCCATCCTTCCATTTTGTCTCTAAACAAGCTTAAAGATCTCGAATTAGAAGGTTGTACGAAGATTGAAAGTTTTCAAACTGAAAATCATTTAGATTCTCTTCAAAACATCCAACTCAGCAACTGCTCATCTCTGAAAGAATTCTCAGTCACTTCAAACAAACTCGAGAAACTGTGGTTAGATGGTACATCTATCCAAGAATTGCCTTCATCAATTTGGTGTTGCCAAAAACTGAAGATGATTGATCTACACAATTGTGACAATCTTGTTGGTTTTGGCGAAAATGAAAACTATGTAGAAATTGGTTCTCTTAGTACTCTGATTCTTTCGGGCTGCAAAAAACTCAATGCATCAAATCTTTGTTTCAACTTCAAAGCATGGCAATCAACCTTAACATCATTGGTTTTGGAAAATTGTTGCAACTTAGAGGCACTCCCTGATAGCATTGGTTTATTATCATCATTGCAATGCTTAAAACTAAGTGGAAGCAATGTTGAGAGGTTGTCACCAAATATCAAAAATCTTCACAACCTTAAAGAGCTAAGGTTAGACAATTGCAAGAAACTCGTGTCTGTGTCTGTGTCTGAGCTTCCACCGTCGCTGACATTGTTTAGTGCTATTAACTGCATTTCATTAGTCTCGGACCTTACTACATTGGACATACCTTTTGAACATAGAACTAAACCTCAACCATATTATCAATCTGTGATCTTCCCAGGAGGTCATGTTCCTAAGAGATTTAGTTTTCATTCCGAAGAAAATCAGCATAAAGGTTCAACTTCTTCGGTAACTATTAGACATCTTCCAGAATCTGGTTTATATGGTTTAGTGTTTTGCATCGTTCTTTCCGAGTCAATTGATCAGTACCGATACGCTCAATGTTCTATTTACCAAAATTCCAAAAGAATAGGTGTAAAATCTGCCTCTCTGCGTAATCTCGATATGCATTTGGTTATTGATCATGTGTTTCTTTGGTATCTTGATGTTGGGAGTGGTTCTAAAAACATTTCTTTGTATAGTCAAATACAAGAAAGTGGAGCATGGGATAATCCTAACAACATATCCTTTGAATTTTCACTTGAAAATGAGGAAGGAGAATGGACAACAGAGAGAATAAAGGGTTGTGGGGTGTTCCCACTTTATCACTTGGAAGAATCTAACAATTTTAAAGAGATGAACGTGTTGCATGTTAGAACAATTGGAAGTGGTCATAAAAATGAAGAGAATGAGACTAAGAAATTGCATCAAACTATTGTGACTCACATTCAGGATGAAAAAGTGGACTCCAATAATACATCTTCCTCTCACATTTTTGTAGTTCCAACAGTAAATGGTTGCAAGACAAAACCACAAAGTTTGGAGGAACATGATTTCTTTACAAATACAAGTTCAATACCACAGAATCAATTTGACACTGCAAGAGCTTCCAACATGAATCCAAATCAGATCATTGAAATGGTGTCAAAAGAAAAAGACTTGATCAATCCGCAACTCGAACAAGATTCTTGGGATCCAATTTCAGAGCTAGAGAGTTTGTTATGTGACAGTTATGATTTGTCTCCCATGTGCACCGACTCAACAAATGTTTCGGTACTCGAAGATCCAAATGTGGCAACAATTCTTGAAAATTTAGAGACCCTTTTGGAGACATCACTTGAAATTGTCTCTTCAGATAATGAAGTGAAGCAAAAGTTTCATCAAATTTTGGAACAACTTGGCCAATTTGAAAACCAAATCCCTATTAGGCTTCATCATGTTATTTGCAAGTTAAGAACTTTCATTGAAGGGGTTGATGTGAGATTTGTGAATGCTCAAAAAACTATACAAGATTATGATCAATTGCTTCAATCAAGGTCTCTTATATCAAAGACATTGGAAAGTGCCAAAGCTAGAGAAAAGCAAAATAATTGTGAAATATCTCGAGGTAAAATACAATTTGAAAAGATCAATTCTGAGATTGTTGAATTAGAACAAAAATTAACTGGTCTTGTTGAGATTAGAGACAAGCTGAAGAGAGATTTGGAGGAATGTGAAGTGATAAATAACAAGATTAAGACAGAGGTTGCACAAGATTTGGTTCCACAATGCAGGATTGTCTTAACAAATTTGAAAAAGTGTGAAACTTCTTACAAAGTGGCCTTAACCAACAAGAAGAAACTTGAAGATGAATGGACTGATTTGAAAAAGAACTTTGCTACTAATAAGATTTGA 3807 0.3543 MYIAFSFYLLIGLLYISLLFLSFLYARSESQFIKDIVEDILQRLNLVHPIELKGVVGIEQNYEGVKSLLKMDSREVRVIGIWGMGGIGKTTLAIALCAKLSSQFEGHCFLANVREQIEKNNIDFLRNKLFSELLEEENLHVNVPKVKYHRVTNRLRRKKVLVVLDDVATSEQLEDLIGDNDCLGPGSRVIVTTRDKHIINHVNEIYEVKELNKHDSLRLFCLSAFKEKHLISGYEKLSESVIAYCKGNPLALKVLGARLCSRSIEAWKSELEKLKMIPNVKIQNVLKLSYDDLDSDQQNIFLDIACFVKEESRDRVTNLLEACHFHPVIGIEDLVEKSLVTISNKGTIQMHDLIQEMGQNIVHQESPKDPGSRTRLWDPNEVYDVLKYNKGTKAVEGITLDISKVEDLYLKSNSFTEMSEMRFLKFYYGKCNSTSNIYLPKNGLDSLSDKLRYLEWHRYCLKSLPSQFRANLLVELSMPYSNLQKLWEGVQNLANLKEIDLRFSNELVEVPDLSKATNLEWLALTGCRNLREIHPSILSLNKLKDLELEGCTKIESFQTENHLDSLQNIQLSNCSSLKEFSVTSNKLEKLWLDGTSIQELPSSIWCCQKLKMIDLHNCDNLVGFGENENYVEIGSLSTLILSGCKKLNASNLCFNFKAWQSTLTSLVLENCCNLEALPDSIGLLSSLQCLKLSGSNVERLSPNIKNLHNLKELRLDNCKKLVSVSVSELPPSLTLFSAINCISLVSDLTTLDIPFEHRTKPQPYYQSVIFPGGHVPKRFSFHSEENQHKGSTSSVTIRHLPESGLYGLVFCIVLSESIDQYRYAQCSIYQNSKRIGVKSASLRNLDMHLVIDHVFLWYLDVGSGSKNISLYSQIQESGAWDNPNNISFEFSLENEEGEWTTERIKGCGVFPLYHLEESNNFKEMNVLHVRTIGSGHKNEENETKKLHQTIVTHIQDEKVDSNNTSSSHIFVVPTVNGCKTKPQSLEEHDFFTNTSSIPQNQFDTARASNMNPNQIIEMVSKEKDLINPQLEQDSWDPISELESLLCDSYDLSPMCTDSTNVSVLEDPNVATILENLETLLETSLEIVSSDNEVKQKFHQILEQLGQFENQIPIRLHHVICKLRTFIEGVDVRFVNAQKTIQDYDQLLQSRSLISKTLESAKAREKQNNCEISRGKIQFEKINSEIVELEQKLTGLVEIRDKLKRDLEECEVINNKIKTEVAQDLVPQCRIVLTNLKKCETSYKVALTNKKKLEDEWTDLKKNFATNKI 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02578 1268 Gene3D - 34 209 IPR027417 -
Trre5g02578 1268 Gene3D - 210 294 IPR042197 -
Trre5g02578 1268 PRINTS Disease resistance protein signature 245 259 - -
Trre5g02578 1268 PRINTS Disease resistance protein signature 561 577 - -
Trre5g02578 1268 PRINTS Disease resistance protein signature 78 93 - -
Trre5g02578 1268 PRINTS Disease resistance protein signature 154 168 - -
Trre5g02578 1268 Coils Coil 1235 1255 - -
Trre5g02578 1268 Gene3D Ribonuclease Inhibitor 586 756 IPR032675 -
Trre5g02578 1268 Gene3D Ribonuclease Inhibitor 374 585 IPR032675 -
Trre5g02578 1268 Pfam NB-ARC domain 65 290 IPR002182 GO:0043531
Trre5g02578 1268 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 31 581 IPR044974 GO:0006952
Trre5g02578 1268 SUPERFAMILY L domain-like 349 750 - -
Trre5g02578 1268 FunFam Disease resistance protein RPS4 392 585 - -
Trre5g02578 1268 Pfam Leucine Rich Repeat 473 491 IPR011713 -
Trre5g02578 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 304 IPR027417 -
Trre5g02578 1268 Coils Coil 1171 1219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02578 Trre-Chr5 20205495 20210038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02578 24 713 WRKY Transcription Factor Family AT4G12020 34.571 1.40e-101 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02578 - - mtr:25491119 1509.97