Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02574 ATGAAGAAGGTTTCTCTTTATGCTTGTTTATTACTCAACTTGAGTTTTTTAGTTATTTTTCCTTATAGCAAAGCTAATCAAGCTGATAGACTTGATAAGTTGATTCTTTCTAGAAGCTCACAGAATTCTCCTAAGACTCTTTCTTGGGAAGAGGAAGATGCATTGAATACACAATCTTCATCTTCTTCTTCTTATGTTGCAGCACCTCAAGAGGGGCTAAGGCAAGCTGACAAGATTGTCACATTGCCTGGTCAACCCTATGGAGTGAATTTTGACCAATACTCTGGCTATGTCAATGTTTATCCTGAAACTGGAAGAGAACTTTTCTATTATTTTGTTGAATCTCCATATAACCCTTCAACAAAACCTTTAGTATTATGGCTCAATGGAGGACCTGGTTGCTCCTCACTTGGGTATGGAGCATTTGAGGAGCTAGGACCCTTCAGAATCAACTCTGACGGCAAAACACTATACCGAAACCAATATGCTTGGAATGAAGTGGCAAATGTACTCTTCTTGGAGTCTCCAGCAGGAGTAGGATTTTCCTACTCAAACACAACTTCTGATTATGACAAATCAGGAGATAAGAGAACTGCTCAAGATGCTTATGTCTTCCTAATCAACTGGCTAGAGAGATTTCCAGAATACAAAACTAGAGATTTTTACATAACTGGAGAGAGTTATGCTGGTCACTATGTTCCTCAACTCGCATCCACTATTCTTCACAACAATAAACTCTACAACCAAACCATTAACCTCAAAGGCATTTCTATAGGGAATGCTTGGATTGATGATGCCACAGGTTTACAAGGGTTATATGATTACTTTTGGACTCATGCATTGAATTCAGATCAAACACATGAGTTGATTGAGAAGTATTGTGACTTCACTACTCGAAATCAATCAAAAATATGTATCAATGCAACCGATAAGGCCTTAATTGAGAAAGGAAACATAGACTTCTATAACATCTATGCTCCAAAGTGTCATGACTCTTCTCTCAAAAATGGTTCAACTGGTTATGTAACTAATGATTTTGACCCTTGTTCTGATCACTATGGCATTGCCTATCTAAATAGACCAGAGGTTCAAAAGGCTCTTCATGCAAAGCCTACAAATTGGAGCCATTGCAGTGGTGATACAGATGCAAGGGTTCCAGTCACATCTTCTAGATATTCGATCAACAAACTCAAACTTCCTATCAACTCTGCTTGGCGTCCGTGGTATTCAGGAAAAGAGATTGGAGGATATGTGGTGGGATACAAAGGATTGACATTTGTTACAGTAAGAGGAGCAGGACATATTGTTCCAAGCTGGCAACCAGAAAGGGCTTTGATTTTGATCTCATCATTCCTCTATGGAAGCCTGCCTACTGTTACACCATCAAATTAA 1392 0.3886 MKKVSLYACLLLNLSFLVIFPYSKANQADRLDKLILSRSSQNSPKTLSWEEEDALNTQSSSSSSYVAAPQEGLRQADKIVTLPGQPYGVNFDQYSGYVNVYPETGRELFYYFVESPYNPSTKPLVLWLNGGPGCSSLGYGAFEELGPFRINSDGKTLYRNQYAWNEVANVLFLESPAGVGFSYSNTTSDYDKSGDKRTAQDAYVFLINWLERFPEYKTRDFYITGESYAGHYVPQLASTILHNNKLYNQTINLKGISIGNAWIDDATGLQGLYDYFWTHALNSDQTHELIEKYCDFTTRNQSKICINATDKALIEKGNIDFYNIYAPKCHDSSLKNGSTGYVTNDFDPCSDHYGIAYLNRPEVQKALHAKPTNWSHCSGDTDARVPVTSSRYSINKLKLPINSAWRPWYSGKEIGGYVVGYKGLTFVTVRGAGHIVPSWQPERALILISSFLYGSLPTVTPSN 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02574 463 Gene3D - 380 455 - -
Trre5g02574 463 ProSitePatterns Serine carboxypeptidases, histidine active site. 424 441 IPR033124 GO:0004185
Trre5g02574 463 Gene3D alpha/beta hydrolase 74 331 IPR029058 -
Trre5g02574 463 FunFam Carboxypeptidase 73 331 - -
Trre5g02574 463 FunFam Carboxypeptidase 361 454 - -
Trre5g02574 463 Gene3D - 349 379 - -
Trre5g02574 463 ProSitePatterns Serine carboxypeptidases, serine active site. 223 230 IPR018202 GO:0004185
Trre5g02574 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 172 IPR001563 GO:0004185|GO:0006508
Trre5g02574 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 173 183 IPR001563 GO:0004185|GO:0006508
Trre5g02574 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Trre5g02574 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 209 234 IPR001563 GO:0004185|GO:0006508
Trre5g02574 463 Pfam Serine carboxypeptidase 83 378 IPR001563 GO:0004185|GO:0006508
Trre5g02574 463 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 80 441 IPR001563 GO:0004185|GO:0006508
Trre5g02574 463 SUPERFAMILY alpha/beta-Hydrolases 76 455 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02574 Trre-Chr5 20169491 20172129 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02574 378 454 Calmodulin-binding Proteins AT2G22960 33.333 6.70e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02574 K16297 - mtr:11443022 788.875