Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02570 ATGAAGAAGGTTTCTCTTTATGCTTGTTTATTACTCAACTTGAGTTTTTTAGTTATTTTTCCTTATAGCAAAGCTAGTCAAACTGATAGACTTGATGAATTGATTATTTCTAGAAGCTCACAGAATCCTCCTAAGACTTTTTCTTGGGAAGAGGAAGATGCATTGAATACACACTCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATGTTACAGCACCTCAAGAGGGATTAAGGCAAGGTGACAAGATTGTCACATTACCTGGTCAACCTTATGGAGTGAATTTTGACCACTACTCTGGTTATGTCACTGTTGATGCTGAGGCTGGAAGAGAACTTTTCTATTATTTTGTGGAGTCTCCATATAACCCTTCAACTAAACCTTTATTATTGTGGCTCAATGGAGGACCTGGTTGTTCCTCACTTGGGTATGGAGCCTTTGAAGAGCTAGGACCCTTCAGAATCAACTCTGACGGCAAAACGCTATACCGTAACAAATATGCATGGAATGAAGCGGCAAATGTGCTCTTCTTGGAATCTCCAGCAGGAGTAGGATTTTCCTACTCAAACACCACTTCTGACTATTACAAGGCAGGAGACAAGGCAACTGCCAAGGATTCCTATGTCTTCCTGATAAACTGGCTGGAGAGATTTCCAGAGTACAAAACAAGAGATTTTTACATAGCTGGAGAGAGTTATGCTGGTCACTATGTTCCTCAGCTTGCATCCACTATTCTTCACAACAATAAACTTTATAACCAAACCATTATTAACCTCAAAGGCATTTCTATAGGGAATGCTTGGATTGATGAGGCCACAGGTTCAAAGGGATTATATGATTACTTTTGGACACATGCTTTGAATTCAGATCAAACTCATGAGTTGATTGAGAAGTACTGTGACTTCACTTCTGAAAATGTTTCAGCAATATGTAACAATGCAACAGATAAGGCCTTAATTGAGAAAGGAAACATAGACTTCTATAACATCTATGCTCCACAGTGTCATGACTCTTCTCTTAAAAATGGTTCAACTGGTTATGTAACTAATGATTTTGACCCTTGTTCTGATCACTATGGTATTGCTTATCTAAATAGACCAGAGGTTCAAAAGGCTCTTCATGCAAAACCTACAAATTGGACTCATTGCAGTGGTGATACTGATGCAAGAGTTCCAGTTACAACTTCAAGATATGCAATCAACACCTTCAAACTCCCTATCAACTCTGCTTGGCGTCCGTGGTATTCAGGAAAAGAGATTGGAGGGTATGTGGTGGGATACAAAGGATTGACATTTGTTACAATAAGAGGAGCAGGACATCTTGTTCCAAGCTGGCAACCAGAAAGGGCTTTGATTTTGATCTCATCATTCCTCTATGGAAGCCTGCCTACTATTTCACCATCAAATTAA 1497 0.3881 MKKVSLYACLLLNLSFLVIFPYSKASQTDRLDELIISRSSQNPPKTFSWEEEDALNTHSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSYVTAPQEGLRQGDKIVTLPGQPYGVNFDHYSGYVTVDAEAGRELFYYFVESPYNPSTKPLLLWLNGGPGCSSLGYGAFEELGPFRINSDGKTLYRNKYAWNEAANVLFLESPAGVGFSYSNTTSDYYKAGDKATAKDSYVFLINWLERFPEYKTRDFYIAGESYAGHYVPQLASTILHNNKLYNQTIINLKGISIGNAWIDEATGSKGLYDYFWTHALNSDQTHELIEKYCDFTSENVSAICNNATDKALIEKGNIDFYNIYAPQCHDSSLKNGSTGYVTNDFDPCSDHYGIAYLNRPEVQKALHAKPTNWTHCSGDTDARVPVTTSRYAINTFKLPINSAWRPWYSGKEIGGYVVGYKGLTFVTIRGAGHLVPSWQPERALILISSFLYGSLPTISPSN 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02570 498 SUPERFAMILY alpha/beta-Hydrolases 111 490 IPR029058 -
Trre5g02570 498 Gene3D - 384 414 - -
Trre5g02570 498 Gene3D - 415 490 - -
Trre5g02570 498 FunFam Carboxypeptidase 107 366 - -
Trre5g02570 498 FunFam Carboxypeptidase 396 489 - -
Trre5g02570 498 ProSitePatterns Serine carboxypeptidases, serine active site. 257 264 IPR018202 GO:0004185
Trre5g02570 498 PRINTS Carboxypeptidase C serine protease (S10) family signature 459 472 IPR001563 GO:0004185|GO:0006508
Trre5g02570 498 PRINTS Carboxypeptidase C serine protease (S10) family signature 194 206 IPR001563 GO:0004185|GO:0006508
Trre5g02570 498 PRINTS Carboxypeptidase C serine protease (S10) family signature 243 268 IPR001563 GO:0004185|GO:0006508
Trre5g02570 498 PRINTS Carboxypeptidase C serine protease (S10) family signature 207 217 IPR001563 GO:0004185|GO:0006508
Trre5g02570 498 MobiDBLite consensus disorder prediction 45 105 - -
Trre5g02570 498 Gene3D alpha/beta hydrolase 108 366 IPR029058 -
Trre5g02570 498 ProSitePatterns Serine carboxypeptidases, histidine active site. 459 476 IPR033124 GO:0004185
Trre5g02570 498 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 114 476 IPR001563 GO:0004185|GO:0006508
Trre5g02570 498 Pfam Serine carboxypeptidase 117 413 IPR001563 GO:0004185|GO:0006508
Trre5g02570 498 MobiDBLite consensus disorder prediction 45 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02570 Trre-Chr5 20150224 20153030 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02570 413 490 Calmodulin-binding Proteins AT2G22960 32.911 1.26e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02570 K16297 - mtr:11443022 776.933