Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02568 ATGAAGAAGGTTTCACTTTATGCTTGTTTATTACTCAACTTGAGTCTTTTGGTTATTGTTCCTTATAGCAAAGCTAGTCAAGCTGATAAACTTGATGAGTTGATTCTATCTAGAAGCTCACAAAATCCTCCTAAGACATTTACTTGGGAAGTGGAAGATACATTGAAAACACAATCTTCTTCTTATGTTGCAGCACCTCAAGAGGGATTAAGGCAAGCTGACAAGATTGTCACATTGCCTGGTCAACCTTATGGAGTTAATTTTGACCACTACTCTGGATATGTCACCGTTGATGCTGAAGCTGGAAGAGAACTTTTCTATTATTTTGTTGAGTCTCCAAATAACCCTTCAACTACACCTTTAATACTGTGGCTCAATGGAGGACCTGGTTGTTCCTCACTTGGGTATGGAGCCTTTGAGGAGCTAGGACCCTTCAGAGTAAACTCTGATGGAAAAACACTATACCGAAACCCATATGCTTGGAATGAAGTTGCAAATGTGCTCTTCTTAGAGTCTCCAGCCGGAGTAGGATTTTCCCACTCAAACACAACTTCTGACTATGATAAGTCAGGAGATAAGAGAACTGCTCAAGATGCTTATGTCTTCCTAATCAACTGGCTAGAGAGATTTCCAGAGTACAAAACCCGAGATTTTTACATAACTGGAGAGAGTTATGCTGGTCACTATGTTCCTCAACTCGCATCCACTATTATTCAAAACAATAAATACTTTAAACAAACCATTATTAACCTCAAAGGCATTTCTATAGGGAATGCTTGGATTGATGATGCCACAAGTTTGAAGGGGTTATTTGATTACTTATGGACTCATGCTTTGAACTCAGATCAAACTCATGAATTAATTGAGAAGTACTGTGACTTCACTACTGAAAATGTTTCAGCAATATGTGTCAATGCAACCACAAAGGCCATAATTGAGAAAGGACGCATCGACTTCTATAACATCTATGCTCCACTTTGTCATGATTCTTCTCTCAAAAATAGTTCAACTGGTTATGTAACTAAAGATTTTGATCCTTGTTCTGATATCTATGGTAATGCCTATCTAAATAGACCAGAGGTTCAAAAGGCTCTCCATGCAAAACCTACAAATTGGAGCCATTGCAGTGAAGTTATTCGTACCTGGAATGACAGTCCAGTTACCATCCTACCAACCATCAATGGTGATACTGATGCAAGGGTTCCAGTAACATCTTCAAGATACTCAATCAATGCTCTCAAGCTTCCTATCAACTCTGCATGGCGTCCATGGTATTCTGGAAATGAGGTTGGAGGATATGTGGTGGGATACAAAGGATTGACATTTGTTACAGTAAGAGGAGCAGGACATCTTGTTCCAAGCTGGCAACCAGCAAGGGCTTTGACTTTGATTGAGTCATTCATCTATGGATACCTGCCACCTATTTCACCATCAAATTAA 1440 0.3937 MKKVSLYACLLLNLSLLVIVPYSKASQADKLDELILSRSSQNPPKTFTWEVEDTLKTQSSSYVAAPQEGLRQADKIVTLPGQPYGVNFDHYSGYVTVDAEAGRELFYYFVESPNNPSTTPLILWLNGGPGCSSLGYGAFEELGPFRVNSDGKTLYRNPYAWNEVANVLFLESPAGVGFSHSNTTSDYDKSGDKRTAQDAYVFLINWLERFPEYKTRDFYITGESYAGHYVPQLASTIIQNNKYFKQTIINLKGISIGNAWIDDATSLKGLFDYLWTHALNSDQTHELIEKYCDFTTENVSAICVNATTKAIIEKGRIDFYNIYAPLCHDSSLKNSSTGYVTKDFDPCSDIYGNAYLNRPEVQKALHAKPTNWSHCSEVIRTWNDSPVTILPTINGDTDARVPVTSSRYSINALKLPINSAWRPWYSGNEVGGYVVGYKGLTFVTVRGAGHLVPSWQPARALTLIESFIYGYLPPISPSN 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02568 479 ProSitePatterns Serine carboxypeptidases, histidine active site. 440 457 IPR033124 GO:0004185
Trre5g02568 479 SUPERFAMILY alpha/beta-Hydrolases 76 471 IPR029058 -
Trre5g02568 479 ProSitePatterns Serine carboxypeptidases, serine active site. 220 227 IPR018202 GO:0004185
Trre5g02568 479 Gene3D alpha/beta hydrolase 71 329 IPR029058 -
Trre5g02568 479 FunFam Carboxypeptidase 380 470 - -
Trre5g02568 479 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 77 457 IPR001563 GO:0004185|GO:0006508
Trre5g02568 479 FunFam Carboxypeptidase 70 329 - -
Trre5g02568 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 169 IPR001563 GO:0004185|GO:0006508
Trre5g02568 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 180 IPR001563 GO:0004185|GO:0006508
Trre5g02568 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 440 453 IPR001563 GO:0004185|GO:0006508
Trre5g02568 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 206 231 IPR001563 GO:0004185|GO:0006508
Trre5g02568 479 Gene3D - 380 470 - -
Trre5g02568 479 Gene3D - 347 379 - -
Trre5g02568 479 Pfam Serine carboxypeptidase 80 469 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02568 Trre-Chr5 20136698 20139235 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02568 355 470 Calmodulin-binding Proteins AT2G22960 27.820 3.92e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02568 K16297 - mtr:11443022 808.135