Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02567 ATGAAGAAGGTTTCACTTTATGCTTGTTTATTACTCAACTTGAGTCTTTTGGTTATTGTTCCTTATAGCAAAGCTAGTCAAGCTGATAAACTTGATGAGTTGATTCTATCTAGAAGCTCACAAAATCCTCCTAAGACATTTACTTGGGAAGTGGAAGATACATTGAAAACACAATCTTCTTCTTATGTTGCAGCACCTCAAGAGGGATTAAGGCAAGCTGACAAGATTGTCACATTGCCTGGTCAACCTTATGGAGTTAATTTTGACCACTACTCTGGATATGTCACCGTTGATGCTGAAGCTGGAAGAGAACTTTTCTATTATTTTGTTGAGTCTCCAAATAACCCTTCAACTACACCTTTAATACTGTGGCTCAATGGAGGACCTGGTTGTTCCTCACTTGGGTATGGAGCCTTTGAGGAGCTAGGACCCTTCAGAGTAAACTCTGATGGAAAAACACTATACCGAAACCCATATGCTTGGAATGAAGTTGCAAATGTGCTCTTCTTAGAGTCTCCAGCCGGAGTAGGATTTTCCCACTCAAACACAACTTCTGACTATGATAAGTCAGGAGATAAGAGAACTGCTCAAGATGCTTATGTCTTCCTAATCAACTGGCTAGAGAGATTTCCAGAGTACAAAACCCGAGATTTTTACATAACTGGAGAGAGTTATGCTGGTCACTATGTTCCTCAACTCGCATCCACTATTATTCAAAACAATAAATACTTTAAACAAACCATTATTAACCTCAAAGGCATTTCTATAGGGAATGCTTGGATTGATGATGCCACAAGTTTGAAGGGGTTATTTGATTACTTATGGACTCATGCTTTGAACTCAGATCAAACTCATGAATTAATTGAGAAGTACTGTGACTTCACTACTGAAAATGTTTCAGCAATATGTGTCAATGCAACCACAAAGGCCATAATTGAGAAAGGACGCATCGACTTCTATAACATCTATGCTCCACTTTGTCATGATTCTTCTCTCAAAAATAGTTCAACTGGTTATGTAACTAAAGATTTTGATCCTTGTTCTGATATCTATGGTAATGCCTATCTAAATAGACCAGAGGTTCAAAAGGCTCTCCATGCAAAACCTACAAATTGGAGCCATTGCAGTGAAGTTATTCGTACCTGGAATGACAGTCCAGTTACCATCCTACCAACCATCAAGTATCTCATTGAAAGTGGCATTAAATTATGGATATACAGTGGTGATACTGATGCAAGGGTTCCAGTAACATCTTCAAGATACTCAATCAATGCTCTCAAGCTTCCTATCAACTCTGCATGGCGTCCATGGTATTCTGGAAATGAGGTTGGAGGATATGTGGTGGGATACAAAGGATTGACATTTGTTACAGTAAGAGGAGCAGGACATCTTGTTCCAAGCTGGCAACCAGCAAGGGCTTTGACTTTGATTGAGTCATTCATCTATGGATACCTGCCACCTATTTCACCATCAAATTAA 1479 0.3915 MKKVSLYACLLLNLSLLVIVPYSKASQADKLDELILSRSSQNPPKTFTWEVEDTLKTQSSSYVAAPQEGLRQADKIVTLPGQPYGVNFDHYSGYVTVDAEAGRELFYYFVESPNNPSTTPLILWLNGGPGCSSLGYGAFEELGPFRVNSDGKTLYRNPYAWNEVANVLFLESPAGVGFSHSNTTSDYDKSGDKRTAQDAYVFLINWLERFPEYKTRDFYITGESYAGHYVPQLASTIIQNNKYFKQTIINLKGISIGNAWIDDATSLKGLFDYLWTHALNSDQTHELIEKYCDFTTENVSAICVNATTKAIIEKGRIDFYNIYAPLCHDSSLKNSSTGYVTKDFDPCSDIYGNAYLNRPEVQKALHAKPTNWSHCSEVIRTWNDSPVTILPTIKYLIESGIKLWIYSGDTDARVPVTSSRYSINALKLPINSAWRPWYSGNEVGGYVVGYKGLTFVTVRGAGHLVPSWQPARALTLIESFIYGYLPPISPSN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02567 492 ProSitePatterns Serine carboxypeptidases, serine active site. 220 227 IPR018202 GO:0004185
Trre5g02567 492 Gene3D - 389 483 - -
Trre5g02567 492 Gene3D alpha/beta hydrolase 71 329 IPR029058 -
Trre5g02567 492 Gene3D - 347 381 - -
Trre5g02567 492 FunFam Carboxypeptidase 70 329 - -
Trre5g02567 492 SUPERFAMILY alpha/beta-Hydrolases 73 485 IPR029058 -
Trre5g02567 492 ProSitePatterns Serine carboxypeptidases, histidine active site. 453 470 IPR033124 GO:0004185
Trre5g02567 492 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 77 470 IPR001563 GO:0004185|GO:0006508
Trre5g02567 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 453 466 IPR001563 GO:0004185|GO:0006508
Trre5g02567 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 206 231 IPR001563 GO:0004185|GO:0006508
Trre5g02567 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 169 IPR001563 GO:0004185|GO:0006508
Trre5g02567 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 180 IPR001563 GO:0004185|GO:0006508
Trre5g02567 492 FunFam Carboxypeptidase 346 484 - -
Trre5g02567 492 Pfam Serine carboxypeptidase 80 482 IPR001563 GO:0004185|GO:0006508
Trre5g02567 492 FunFam Carboxypeptidase 389 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02567 Trre-Chr5 20136698 20139235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02567 355 483 Calmodulin-binding Proteins AT2G22960 29.323 5.12e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02567 K16297 - mtr:11443022 838.95