Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02559 ATGGGAAGGTGTAAGATTGAGTTGAAAAGGATTGAAAAATCAAGCAACAGGCTAGTTACTTATTCAAAGAGGAAAAATGGAATCATTAAGAAGGCAAAAGAAGTAAGTGTTCTTTGTGATGCTCAAGTTTCTCTTATTCTCTCCGGTGAATCTGGAAAGATCCATGAATACATCAGTCCTTCCACCACATTGATTGATGTCCTAGACAAATACCAGAGAGCTTCAGGGAAACAACTATGGAATGCTGAGCATGAGAGTCTTAGCAATGAAATTGATAGAATCAAAAAGGAGAATGAAAAATTGGAACTTGAGCTGAGGCACTTGAAGGGTAAGAATATTACCTTATTGAATTTCAATGAGCTTATTTCCCTTGAGGATGCCCTTGAAAATGGCCTTACCGGTGTTCGCGGCAAAATGATGGAAATGCATGGGATGGTCAAGAGAAATGGTGAGATTTTGGAGGAAGAAAATAAGGAACTGGATTTGCTTCTGCAACAGCATATGGCAGTGGAAGATGTGGAAAACAAGCATGATGCATCAGATCATAAGTGA 552 0.3895 MGRCKIELKRIEKSSNRLVTYSKRKNGIIKKAKEVSVLCDAQVSLILSGESGKIHEYISPSTTLIDVLDKYQRASGKQLWNAEHESLSNEIDRIKKENEKLELELRHLKGKNITLLNFNELISLEDALENGLTGVRGKMMEMHGMVKRNGEILEEENKELDLLLQQHMAVEDVENKHDASDHK 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02559 183 Pfam K-box region 82 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre5g02559 183 Coils Coil 153 173 - -
Trre5g02559 183 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Trre5g02559 183 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre5g02559 183 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre5g02559 183 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre5g02559 183 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre5g02559 183 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre5g02559 183 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Trre5g02559 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre5g02559 183 Coils Coil 77 111 - -
Trre5g02559 183 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre5g02559 183 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 158 - -
Trre5g02559 183 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre5g02559 183 Gene3D - 14 100 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02559 Trre-Chr5 20023342 20023893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02559 1 146 MADS-box Gene Family AT5G20240 56.849 6.40e-57 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre5g02559 K-box 1.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02559 K09264 - gmx:100306010 253.062