Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02552 ATGGGACGAGCGATTGTTAATGAAGCATCTCCTAAAGATCCCGGAAGAAGAAGTCGATTATGGAATTCTGAGAATGTGTGTGATGTATTGAAATATAACAAGGGAACTGAAGTTGTTGAAGTTATATTTTTCGATAGTCTTGAACGGTTATCTGATAAATTGAGGATGCAATATAGCGAGCTTAAAAAGCTTTGGGATGGAATTCAGAACTTGGACAATTTAGTGGAGATTAATCTTGATGGCTCCAAACACCTGATTGAGATCCCAGACTTATCAAGGGCACCAAATCTTCAAATAGTGAATCTTTCTTATTGTAAGAGTCTCCGTCAACTGCATCCATCCGTTTTCACTAGACCCAAGCTTAGAGAACTGCATTTATGGCATTGCAGAAAGATTAAAAGCCTGAAAACTGACATTCATTCAAAATCTCTCCAAAAAGTCATTCTCTCTGATTGTTCATCTCTTGTGGAATTTTCGTTGACATCGGAGGAAATGACGTGGTTGTCGTTAAATGGCACCGCTATATGTGAATTTCCTTCATCGATGTGGCGTAATAGCAAGCTCAATGATCTCAATCTAGGGGAATGTAAGAAGCTTAAGATTGTTAGGAAGCAGATATCAACTGATCTAGGATTGAGGTATGTTAGAATGTTGAACCTTTCAGGATGCACTGAAATCAATACATCAAATTTGTGGTTCATCCTTGATGGCATGCCATCTTTATATGATCTAAATTTGAGCTACTGCTGCAACTTAGAAACCCTCCCGGATAACATCCAAAACAATTCATTATTATTAATTCTTAAATTAGATGAATGCAGTAAACTTAAGTCTCTACCAAAGCTTCCTACATCCTTGATGCAATTGACAGCTTTTAACTGCACTTATCTAGACACAAACATATTACACAAATTCCACTTCAACAAAGGCTTAAAGTTTAATTTCAACAGAAAGGATATCTGTTACCTTCCAGGTGGCCAAATTCCATCTGAGTTTGATTATCAGACAACAAAGGCTTCAATAGACATCCCCCATATTCCAAAATCTGGCTTGTGTGGTTTCTTTTTTTGCATCGTTCTCTCTAAGGGCTTAAATTGTTATGGTCAAAGAGTAGATTGTACTATCTATGAGCTTGGAAAAGAAATCCTTCACTTGAAAGAACTTTTTTTCATTCAAAAAACTTTTGGAAAGCCAGAGACATTAATTTTAGATCATGTATTGTTATGTTCCTGGTTTGGTGAAGATTACAATTTGGTGGATATGATGAATGAAAGTGATCATTACAACCTTTCATTTGAATTCAAACATTTGGTTCCTGATGGCGAATATGATTCTGATGACGAGCAAGAATGGTCAAGTAAGGGGATAAAGGGTTGTGGTGTCTTCCCTGTATATGGCTTGGAACATAGTGGAGTTGAAATTGTTGAATTATCTCATGAGTCTGAAATTGATGAGTCTGAAATTGATGAAAATGTTGAAGATGAGCCTAAAATTGTTGAACTACAATTCACATTCAGTGGTCAACAACAAAAGGAGGCTCTTCGGATGAGAATGAAGTTTAACATCAACAAGTTAATATTCCCACGAAACAAAAGACGAGGACTTGAATGA 1611 0.3644 MGRAIVNEASPKDPGRRSRLWNSENVCDVLKYNKGTEVVEVIFFDSLERLSDKLRMQYSELKKLWDGIQNLDNLVEINLDGSKHLIEIPDLSRAPNLQIVNLSYCKSLRQLHPSVFTRPKLRELHLWHCRKIKSLKTDIHSKSLQKVILSDCSSLVEFSLTSEEMTWLSLNGTAICEFPSSMWRNSKLNDLNLGECKKLKIVRKQISTDLGLRYVRMLNLSGCTEINTSNLWFILDGMPSLYDLNLSYCCNLETLPDNIQNNSLLLILKLDECSKLKSLPKLPTSLMQLTAFNCTYLDTNILHKFHFNKGLKFNFNRKDICYLPGGQIPSEFDYQTTKASIDIPHIPKSGLCGFFFCIVLSKGLNCYGQRVDCTIYELGKEILHLKELFFIQKTFGKPETLILDHVLLCSWFGEDYNLVDMMNESDHYNLSFEFKHLVPDGEYDSDDEQEWSSKGIKGCGVFPVYGLEHSGVEIVELSHESEIDESEIDENVEDEPKIVELQFTFSGQQQKEALRMRMKFNINKLIFPRNKRRGLE 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02552 536 Pfam Leucine Rich Repeat 53 69 IPR011713 -
Trre5g02552 536 SUPERFAMILY L domain-like 52 300 - -
Trre5g02552 536 Gene3D Ribonuclease Inhibitor 163 303 IPR032675 -
Trre5g02552 536 Gene3D Ribonuclease Inhibitor 26 162 IPR032675 -
Trre5g02552 536 Coils Coil 44 64 - -
Trre5g02552 536 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 203 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02552 Trre-Chr5 19995955 19998165 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02552 2 293 WRKY Transcription Factor Family AT4G12020 27.198 1.66e-17 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02552 - - cam:101499873 400.593