Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02549 ATGGCTATGCAACCATACACAGGTGCTTCTTCTTCTTCAATGGTATCTTTAAAAAAATATGATGTTTTTATTAGCTTTCGTGGTGAGGATACTCGTACAAAATTCACAAGCCATCTTTATGTTGCTTTGAGCAAGAAATTTCCAACATTTATTGACGAAAAAGAGCTTGAAAAAGGAGATGAGATCTCTTCGGCACTTATGAAAGCCATTGAGGAGGCATATGTATCTGTAGTCATATTCTCAGAAGACTATGCTTCTTCGAAATGGTGTTTGAATGAACTCGTCAAAATTCTTGAATGCAAGAAAGAACAAGGACAAATTGTGATACCGGTATTCTATGAAGTAGATCCATCAGATGTGAGGAATCAGAGAGGGAGTTACGGGCAAGCTTTTGAAAATCATGAGCGAGATTTGAAACACAATAAAGACAAGTTGCAAAAATGGAGAAATGCTCTTAGAGAAACAGCTAATTTATCTGGATGGCACTTTCAAAATGACAGGACTGAATCAACTTTCATCAAGGACATTGTTGAAGATGTTTTGAAAAAATTGAATCGTACACTCCCATTTGAAGTTGATAAGGAAATTGTAGGAATTGAGAAAAAGTATGAAGAGATTGAATTGTTACTGAAAATTGGATCAACTGATGTTAGAACCCTTGGCTTATGGGGCATGGGTGGCATAGGAAAGACCACTCTAGCTGAAGATTTATATGTTAACATGTGTTCTGAATTTGATCTTCATTGCTTCATCGGAAATGTAAGGGAAGAATCAATCAGGTGTGGACTCAATGTTGTACGTAACAAACTTCTTACTACATTGTTGGAACTTAGACTTGATGCACGTTACGTAGAAACCCCAATTTTCAAAAGAAAACTTGCATGTGAAAAAAGTTTAATTGTGTTGGATGACGTGGCAACTTTAGAGCAAGCAGAGAATTTGAACAATATGTGCTTGGGACCAGGTAGTAGAGTCATTGTCACAACTAGAGACAAGCAAGTATTTAGTCAATTTGATGAATGCCTAATTTATGAGGTTAAAGGATTGGACAAAAATAACTCTCTTCAACTATTTTGTTGGCATGCCTTCCGGACAAAACATGCTAAAGATGGATATGAAGCGCTCTTAGAAAGGGCAATTGGGTATTGCGGAGGCAATCCTCTGGCTTTAAAAGTCTTAGGTGCGAGTTTCCGTATAAAAAGCAAAGAAGTCTGGGAAAGTGAATTGGAGAAGCTCAAAGAGATTCCTAATAGGACAATTCAGGATGTGTTAAGATTGAGTTTCGATGATTTAGATCGTACTCAACAAGACATATTTCTAGACATTGCATGCTTCTTTGGCTCTAAGGCATTTAATATTCATTATAATCACAAAGGTTACCTAACAGATATATTAGAAGCTTGCAAATTTTTTGCAGTAAGTGGGATAGATGTCCTTCTAAATAATGCACTCATAACTTGTAATGATTATGATTCAATTGAAATGCATGATTTGTTAGTAGAAATGGGACGAGCGATTGTTAATGAAGCATCTCCTAAAGATCCCGGAAGAAGAAGTCGATTGTGGAATTCTGAGGATGTGTGTGATGTATTGAAATATAACAAGGGAACTGAAGTTGTTGAAGTTATAAGTTTCAAAATCGATACTTCTAAAACTGAGGATCTATCCTTAAGCTCAGATTCCTTTAGAAGCATGATCAACTTAAGATATCTTTATATCACCTATCGTGTGCACTTCCCTAAAGGTCTTGAATGGTTATCTGATAAATTGAGGTACCTTCATTGGGATGTATTTCCACTTATGTCTTTACCATCGACCTTTTGTGCTGAAAAGCTTGTAGTACTTAGAATGACCAATAGCAAGCTTAGAAAGCTTTGGGATGGAGTTCAGAACTTGCAAAATTTAGTGGAGATTGATCTTGAAGACTCCTATGACCTGATTGAGATCCCAGACTTATCAAGGGCACCAAATCTTCAAATAGTGAATCTTAATTCTTGTGAGAGTCTCCCTCAACTCCATCCATCTGTTTTCACTAGCCCCAAGCTTAGAGAACTGCATTTATGTCATTGCAGAAAGATTAAAAGCCTGAAAACTGACATTCATTCAAAATCTCCCCAAAAAGTCATTCTCTGGGATTGTTCATCTCTTGTGGAATTTTCAGTGACATCGGATGCAATGACGTCGTTGTCTTTAAATGGCACCGCTATACATGAATTTCCTTCATCAATATGGCATAATAGCAAGCTCGATGATCTCGATCTAGGGGACTGTGTGAAGCTTAACATTGTTAGGAAGAAGTTATCAACTGATCTAGGATTGAGGTCTCTTAGAACATTGGACCTATCAGGATGCACTGAAATCAATACATCTAATTTGTGGTTCATCCTTGATGGCATGCCAGCTTTATATGATCTAAATTTGAGAAGGTGCTGCAACTTAGAAACTCTCCCGGATAACATCCAAAACAATTCATTATTAGAAATTCTTGAATTAGATGAATGCAGTAAACTTAAGTCCCTACCAAAGCTTCCTACATCGTTGAAACAATTGACAGCTGTTAACTGCACTTATCTTAATCTAGACACAAACATATTACACAGATTCCACTTCAGTAAAGATTCCGATACAGGCTTCAAGAAAGAATATGATCCTTTAAAAGTCTGTTACCTTCCAGGTGGCCAAGTTCCCTGCGAGTTTGATTATCAGACAACAAAGGCTTCAATAGACATCCTCCCTATTCCAAAATCTGGCTTGTGTGGTTTCATTTTTTGCATCGTTCTCTCTAAGGGATTTAATTTTCGTCAGCAAAGAGTAGATTGTACTATCTATGAGCATGGAAAAGAAATCCTTTACTTGAAAGAAATTTTTGTCATTCATGATACTTTTGGAAATGGAGAGGCAGAGACATTAATTTTGGATCATGTATTGTTATGTTCGTGGTCTGGTGGTGATAATTACAAATTGGTGAATATGGGGAATGAAAGTGATCATTACAACCTTTCATTTGAATTCAATCATTTGGATCCTAAAGGGATGTACTATCATTATGGCATGGAAGAATGGTCAAGTAAGGGGATAAAGGGTTGTGGTGTCTTCCCTGTATATGCCTTGAAACATAGTGGAGTTGAAATTGTTGAATTACAATCCAGTGCTCAATTCTCTCATGAGTCTGAAATCGATGAAAATGTTGAAGATGATTCTGAATCTGATAGAGTTGAAATTGTTGAACTACAATTCACATTCAGTGCTCAAGTCTCTGATGAGTCTGATCAACATTTGAAATTTGATATTGATGATTCACAAAACCAAATCTCTACAGATGAAAATCAAAATGAACATCAGCAAATTAATCTTCCCCCAAAAGAAAAAGATGACTTGAATGATAAATTTTCTTGTGCATGTTCAATTGGTCTTTTGTTGAAACACCTTCTGGAAGAGTCTAAGCGTTATTTCTCTTGA 3459 0.3643 MAMQPYTGASSSSMVSLKKYDVFISFRGEDTRTKFTSHLYVALSKKFPTFIDEKELEKGDEISSALMKAIEEAYVSVVIFSEDYASSKWCLNELVKILECKKEQGQIVIPVFYEVDPSDVRNQRGSYGQAFENHERDLKHNKDKLQKWRNALRETANLSGWHFQNDRTESTFIKDIVEDVLKKLNRTLPFEVDKEIVGIEKKYEEIELLLKIGSTDVRTLGLWGMGGIGKTTLAEDLYVNMCSEFDLHCFIGNVREESIRCGLNVVRNKLLTTLLELRLDARYVETPIFKRKLACEKSLIVLDDVATLEQAENLNNMCLGPGSRVIVTTRDKQVFSQFDECLIYEVKGLDKNNSLQLFCWHAFRTKHAKDGYEALLERAIGYCGGNPLALKVLGASFRIKSKEVWESELEKLKEIPNRTIQDVLRLSFDDLDRTQQDIFLDIACFFGSKAFNIHYNHKGYLTDILEACKFFAVSGIDVLLNNALITCNDYDSIEMHDLLVEMGRAIVNEASPKDPGRRSRLWNSEDVCDVLKYNKGTEVVEVISFKIDTSKTEDLSLSSDSFRSMINLRYLYITYRVHFPKGLEWLSDKLRYLHWDVFPLMSLPSTFCAEKLVVLRMTNSKLRKLWDGVQNLQNLVEIDLEDSYDLIEIPDLSRAPNLQIVNLNSCESLPQLHPSVFTSPKLRELHLCHCRKIKSLKTDIHSKSPQKVILWDCSSLVEFSVTSDAMTSLSLNGTAIHEFPSSIWHNSKLDDLDLGDCVKLNIVRKKLSTDLGLRSLRTLDLSGCTEINTSNLWFILDGMPALYDLNLRRCCNLETLPDNIQNNSLLEILELDECSKLKSLPKLPTSLKQLTAVNCTYLNLDTNILHRFHFSKDSDTGFKKEYDPLKVCYLPGGQVPCEFDYQTTKASIDILPIPKSGLCGFIFCIVLSKGFNFRQQRVDCTIYEHGKEILYLKEIFVIHDTFGNGEAETLILDHVLLCSWSGGDNYKLVNMGNESDHYNLSFEFNHLDPKGMYYHYGMEEWSSKGIKGCGVFPVYALKHSGVEIVELQSSAQFSHESEIDENVEDDSESDRVEIVELQFTFSAQVSDESDQHLKFDIDDSQNQISTDENQNEHQQINLPPKEKDDLNDKFSCACSIGLLLKHLLEESKRYFS 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02549 1152 Gene3D - 16 185 IPR035897 -
Trre5g02549 1152 Gene3D Ribonuclease Inhibitor 702 864 IPR032675 -
Trre5g02549 1152 SUPERFAMILY L domain-like 496 865 - -
Trre5g02549 1152 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 442 IPR027417 -
Trre5g02549 1152 ProSiteProfiles TIR domain profile. 18 184 IPR000157 GO:0007165
Trre5g02549 1152 Gene3D Ribonuclease Inhibitor 542 691 IPR032675 -
Trre5g02549 1152 Gene3D - 348 432 IPR042197 -
Trre5g02549 1152 Coils Coil 131 151 - -
Trre5g02549 1152 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 762 IPR044974 GO:0006952
Trre5g02549 1152 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 186 - -
Trre5g02549 1152 Pfam Leucine Rich Repeat 611 630 IPR011713 -
Trre5g02549 1152 Gene3D - 186 342 IPR027417 -
Trre5g02549 1152 Pfam NB-ARC domain 207 414 IPR002182 GO:0043531
Trre5g02549 1152 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 161 IPR035897 -
Trre5g02549 1152 PRINTS Disease resistance protein signature 383 397 - -
Trre5g02549 1152 PRINTS Disease resistance protein signature 219 234 - -
Trre5g02549 1152 PRINTS Disease resistance protein signature 292 306 - -
Trre5g02549 1152 PRINTS Disease resistance protein signature 771 787 - -
Trre5g02549 1152 SMART till_3 19 158 IPR000157 GO:0007165
Trre5g02549 1152 Pfam TIR domain 19 191 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02549 Trre-Chr5 19955760 19961832 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02549 5 854 WRKY Transcription Factor Family AT4G12020 30.549 2.56e-89 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02549 - - cam:101499873 1099.35