Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02548 ATGTCCTCAAATGTCCTCCTCAACCAAGATAACCAAGGCTGTATTTCTGATTTTGGCCTGACCTCACTTATCAATGTTCCTGCAAAACCTTCTGGAGCTGCCGGTTATCACGCTCCTGAGGTGATTGAAACTGGTATGCACTCTCATAAATCAGATGTCTACAGCTTTGGTATCCTCCTTCTTGAATTGGTTACAGGTAAATCGCCTCTACAATCTCATGGACACAATGATATGGACGTTGATCTCCCTAGGTGGGTTTCCTCTGTTGTTCGGGAGAAATGGACAGCCAAGGTTTACGATGTTGAGCTAATGAGGTACCAAAACATGGAAGAAGAAATGGTGCAAATGTTGCAAATTGCCATGACATGTGTAGCAATGAGGCCTGATGCGAGACCTAACATGGTAGAAGTGGTAAGAATGATCGAAGAGATCCAGCAATCTGACTTAGAGTCAGAGAGCCGACCGTCTTCCGAAGAGAATAAATCTAAGGACACAAATGTTCAGACTCCAATACTCCATAGATTGATTAAATATACCTTTTTTTATCAACAAGGAAGTGATACTTAA 567 0.4215 MSSNVLLNQDNQGCISDFGLTSLINVPAKPSGAAGYHAPEVIETGMHSHKSDVYSFGILLLELVTGKSPLQSHGHNDMDVDLPRWVSSVVREKWTAKVYDVELMRYQNMEEEMVQMLQIAMTCVAMRPDARPNMVEVVRMIEEIQQSDLESESRPSSEENKSKDTNVQTPILHRLIKYTFFYQQGSDT 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02548 188 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 2 149 IPR046959 -
Trre5g02548 188 MobiDBLite consensus disorder prediction 146 166 - -
Trre5g02548 188 Gene3D Transferase(Phosphotransferase) domain 1 1 172 - -
Trre5g02548 188 MobiDBLite consensus disorder prediction 146 161 - -
Trre5g02548 188 SUPERFAMILY Protein kinase-like (PK-like) 3 161 IPR011009 -
Trre5g02548 188 ProSiteProfiles Protein kinase domain profile. 1 144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g02548 188 Pfam Protein kinase domain 3 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02548 Trre-Chr5 19950983 19951549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02548 2 168 Receptor kinase-like Gene Family AT5G58300 66.071 6.10e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre5g02548 Pkinase 4.6e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02548 - - gmx:100796171 265.388