Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02541 ATGGCTATGCAACGCACCGGCGCTTCTTCTTCGAAAAAATATGATGTTTTTATTAGCTTTCGCGGTGAGGATACTCGTAGAAAATTCACAAGCCATCTTTATGATGCTCTAAACAAGAAAGTTGTAACCTTTTTTGACGAAAATGAGCTTGAAAAAGGAGACGAGATCTCTTCAGCACTTATCAAAGCCATTGAGGAGGCAGATGCATCAGTAGTTGTTTTCTCAGAAGACTATGCCTCCTCAAAATGGTGCTTGAATGAACTCGTCAAAATTCTTGAATGCAAGAAAGATCTAGGACAAATTGTTATACCTGTCTTCTATGAAGTAGATCCATCACATGCACGGAATCAGAATGGGAGTTATAAGCAAGCTTTTAAAAAACATGAGCGAAATTTGAAGCATAAACACAAGTTACAGATATGGAGAAATGCTCTCACCGAAGCGGCCAATTTATCTGGGTGGCACTCTCAAAACTACAGGATCGAATCAGATTTTATTAAAGACATTGTCGAAGATGTTTTAAAAAAATTGAATCATAGACAACCATTTGAAGTTAATGAGGAACTTGTAGGAATTGAGAAAAAAATTGAAGAGCTTCGTCTTGATGCACCTTATGTAGAAAGCCCAATTTTCATAAGAAGACTTGCAAGTGAAAGAAGTTTCATTGTGTTGGATGATGTGGCAACCTTAGAGCAAGCAGAAAATCTTAACATTATTAATAATTGCTTGGGATCGGGTAGTAGAGTCATTGTCACAACTAGAGACAAAGAGATATGTAGTCAATTTAATGAATGTGAAATATATGAAGTCAAAGGATTGAATGAAGATGAATCTCTTGAGCTATTATGTTTGAATGCCTTTAGACAAAAACATCCTAAAGAGGGATATGAAGGGCTCACAAAAATTGCAATCAGTTATTGTAGAGGCAATCCCCTGGCTTTAAAAGTTTTAGGTGCATATTTCTGTAAAAAAAGCAAAGAAGTGTGGCAAAGTGAATTGGAGAAGCTCAAAAAAATTCCTAATGTGCGGATTCATAATTTGTTAAAATTGAGTTTTGATGATTTAGATCGTACTCAGCAGGACATATTTCTAGACATTGCATGCTTCTACTACTCAGAACCACGCGACCTTTATAATCCAGGTTACCTAAGAGCTCTATGGAATGCTTGCAATTTTTTTGCAGAAAGTGGTATAAAAGTCCTTTTGTGTAGAGCACTCATAACAATTAGAAGTAATGTTAAAATTGAAATGCATGGTTTGTTAGTAGATATGGGACGAGAGATTGTTAAGCAAGAATCTCCTAAAGACCCCGGAAGAAGAAGTCGATTGTGGGATCCCGAGGAAATTTATCAAGTATTGAAACATAACAAGGGAACTGAAGTTATTGAAGTTATACTATTCAATACTTCTAAAATTGGGGATTTATACTTGAGCTCTGATTCCTTTAAAAACATGATCAGCTTAAGATATCTTCATATCACAAATAGTAGTCAGCAAATTGGGGGGAAATGCTACATTGTGAACTTCCTTGAAGGCCTTGAGTGGTTGTCTGATAAATTGAGGCACCTTTATTGGGATTCATTCCCACTTGAGTCTTTGCCATCAACCTTTTGTGCTGAAAACCTTGTTGAAGTTAACATGTCCTATAGCAAGCTTAAAAAGCTTTGGGATGGAATTCAGAAGCTTAGCAATTTAATGATTATTAGTCTTAATTGCTCCAAAGACCTGATTGAGATTCCGGACTTATCAAAGGCACCGAGTCTTGAAATAGTATCTCTTAAGGGTTGTGAGAGTCTCCGTCAACTCCATCCATCCGTTTTCACTTCCCCGAAGCTTAGATATATGTATTTAAATGGTTGCAAAAAGTTGGAAAGCCTGAAAACGGACATTCATTCAAAATCTCTCCGAACACTCGATCTTAGTGATTGTTCATCTCTTGTGGAATTATTGGTGACATCAGAGGAAATGACGACATTGTTGTTACGTGGCATCGCTATACATGAATTTCAGTCATTGATGTGGCGTAACAGAAAACTCACTTCTCTTAATTTTAAGCTATGTAAGAAGCTTAGCATTGTTGGGAAGAAGTTATCAAATGATCCAGGATTCGAGTCTTTTACAATGTTGAATCTTTCAGGATGCATACAAATCAATACATTGAATTTGTGGTTCATCTTTGATGGTATGCATTCTATAAAAGATCTATATTTAAGAGGCTGTCGAAACTTAGAAGCTCTCCCGGACAACATCGTAAACAATTCATCGTTGCGAAGACTTGATTTAGATGAATGTAGGAAAATTAAGTCCCTACCGAAGCTTCCTGCATCCTTGCAACAATTGACAGCTGTTAACTGCACGTATCTGGACGCAAACACCATTCAACAATCAATGCTTGAGAACATGTTAGACAGACTCTGCAGCAACTACGGGCGTAGATCAAATAATATTAGTGATTACTCTTTTCTTTCAGGTTCCAAAGTTCCAAGAGATTTTGGATTTCAAACAACAGAAGCTTCAATAGTTATTCCTCCAATTCCAAAATCTGGCTTGTGTTGTTTGATGTTTTGCATCATTCTCTCTGAAGGCGTAAATGTTGATTGCGACCACGTTCATTGTACTATCTATGAAAACACCAAAGAAGTCGTCGAATGTGATGTATTTTGTGGGAGAGGGAAATTAATTTCAGATCATGTATTGTTAAGTTGTTGGTATAGTAATGACAAATTGATGGAGGTGGGGAATGAAAATGAGGGTGATGATTACAAATTTTCATTTGAATTCAAACATTATGTTCCGGAAGAGAAACCGTGGTCGACTAAGGGAATAAAAGGTTGTGGAGTTATCCCTGTGTATGGCTTGGAACATAATTTGGAGTTGGATGGTAGAAGCCATAGTAGAGTTGAACTTGTTGAATTGCAATCCACTGAATCCAGTGCTCAAATCTCTACAAATGGAAATGAAGATGACCAGCAACAACTTGTTATTTTCCCCGAAGAAAAGGACGCGGACTTGAATGATAAATCTTCTTGTGAATGTTCAATCGCAGTATACCTTGATGCAGTGGATTAG 3069 0.3695 MAMQRTGASSSKKYDVFISFRGEDTRRKFTSHLYDALNKKVVTFFDENELEKGDEISSALIKAIEEADASVVVFSEDYASSKWCLNELVKILECKKDLGQIVIPVFYEVDPSHARNQNGSYKQAFKKHERNLKHKHKLQIWRNALTEAANLSGWHSQNYRIESDFIKDIVEDVLKKLNHRQPFEVNEELVGIEKKIEELRLDAPYVESPIFIRRLASERSFIVLDDVATLEQAENLNIINNCLGSGSRVIVTTRDKEICSQFNECEIYEVKGLNEDESLELLCLNAFRQKHPKEGYEGLTKIAISYCRGNPLALKVLGAYFCKKSKEVWQSELEKLKKIPNVRIHNLLKLSFDDLDRTQQDIFLDIACFYYSEPRDLYNPGYLRALWNACNFFAESGIKVLLCRALITIRSNVKIEMHGLLVDMGREIVKQESPKDPGRRSRLWDPEEIYQVLKHNKGTEVIEVILFNTSKIGDLYLSSDSFKNMISLRYLHITNSSQQIGGKCYIVNFLEGLEWLSDKLRHLYWDSFPLESLPSTFCAENLVEVNMSYSKLKKLWDGIQKLSNLMIISLNCSKDLIEIPDLSKAPSLEIVSLKGCESLRQLHPSVFTSPKLRYMYLNGCKKLESLKTDIHSKSLRTLDLSDCSSLVELLVTSEEMTTLLLRGIAIHEFQSLMWRNRKLTSLNFKLCKKLSIVGKKLSNDPGFESFTMLNLSGCIQINTLNLWFIFDGMHSIKDLYLRGCRNLEALPDNIVNNSSLRRLDLDECRKIKSLPKLPASLQQLTAVNCTYLDANTIQQSMLENMLDRLCSNYGRRSNNISDYSFLSGSKVPRDFGFQTTEASIVIPPIPKSGLCCLMFCIILSEGVNVDCDHVHCTIYENTKEVVECDVFCGRGKLISDHVLLSCWYSNDKLMEVGNENEGDDYKFSFEFKHYVPEEKPWSTKGIKGCGVIPVYGLEHNLELDGRSHSRVELVELQSTESSAQISTNGNEDDQQQLVIFPEEKDADLNDKSSCECSIAVYLDAVD 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02541 1022 Gene3D - 272 356 IPR042197 -
Trre5g02541 1022 PRINTS Disease resistance protein signature 307 321 - -
Trre5g02541 1022 PRINTS Disease resistance protein signature 214 228 - -
Trre5g02541 1022 PRINTS Disease resistance protein signature 630 646 - -
Trre5g02541 1022 SUPERFAMILY "Winged helix" DNA-binding domain 343 454 IPR036390 -
Trre5g02541 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 366 IPR027417 -
Trre5g02541 1022 SMART till_3 13 151 IPR000157 GO:0007165
Trre5g02541 1022 ProSiteProfiles TIR domain profile. 12 177 IPR000157 GO:0007165
Trre5g02541 1022 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 213 661 IPR044974 GO:0006952
Trre5g02541 1022 SUPERFAMILY L domain-like 467 788 - -
Trre5g02541 1022 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 179 - -
Trre5g02541 1022 Gene3D Ribonuclease Inhibitor 656 820 IPR032675 -
Trre5g02541 1022 Pfam NB-ARC domain 193 341 IPR002182 GO:0043531
Trre5g02541 1022 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 154 IPR035897 -
Trre5g02541 1022 Gene3D - 10 183 IPR035897 -
Trre5g02541 1022 Gene3D Ribonuclease Inhibitor 440 655 IPR032675 -
Trre5g02541 1022 Pfam TIR domain 13 191 IPR000157 GO:0007165
Trre5g02541 1022 Pfam Leucine Rich Repeat 541 560 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02541 Trre-Chr5 19905068 19909011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02541 214 830 WRKY Transcription Factor Family AT5G45050 30.967 4.23e-67 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02541 - - cam:101499873 805.823