Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02540 ATGGCTATGCAACTGTACACAGATGCTTCTTCTTCAATGAGCAAAGACAAGTTGCGGAAATGGAGAAATGCTCTCACTGAAGCAGCCAATTTATCTGGGTGGGACTCTCAAAATTACAGGATTGAATCAAATTTCATCAAGGCCATTGTTGAAGATGTATTTACAAAACTGAATCGTAAACTCCCATTACATGTTAATAAGGATATTGTTGGAATTGAGAAAAAGTACAAAGAGATTGAATTGTTCTTGAAAAATGGATCATCTGATGTTAGAACCCTTGGCTTATGGGGCATGGGTGGCATAGGAAAGACCACTCTAGCTAAATATGCATATACTAAACTGTCTTTTCAATTTGAACGTCGTTGTTTGCTGGAAAATGTAAGGCAAAAATCTAACAACTGTGAACCCTCAGATGTACGCAAACTTTTGCTTTCTAAATTGTTTGAGCTTCCACTTAATTCACCTTATGTAGAAACTCCAATTTTAGAAAGAAGACTTGCATGTGAAAAAAGTTTAATTGTGTTGGATGATGTGTCAACTTTAGAGCAAGCAGAGCATCTGAACAATATGTGTTTGGGACCAGGTAGTAGACTCATTGTCACAACTAGAGACAAACAAATATTTAGTCAGTTTGATGAATGTCAAATTTATGAGGTTGAAGGATTGGACAAAGATGACTCTCTTCAACTATTCTGTTGGCATGCCTTCAAGACAAAACATGCTAAAGTTGGATATGAAGAGCTCATAGAAAGGGCAATTTGGTATTGCAGAGGCAATCCTCTGGCTTTAAAAGTTTTAGGTGCAAATTTCCGTACAAAAAGCAAAGAAGTGTGGGAAAGTGGACTGGAGAAGCTCAAAAAGATTCCTGATAGAGGAATTCATAAAGTGTTAAAATTGAGTTTCGATGACTTAGATGATACTCAAAAGAACATATTTCTAGACATTGCATGCTTCTTCGGCTCTCGGGCATCTAATAATGTTAATTATATTCACGGAGGTTACCTAACAGATATATTAGAAGCTTGCGATTTTTTTGCAGTAAGTGGGTTAGATGTCCTCCAAAATAAAGCACTCATAACTCGTAATGATGATGATGATTACATTGAAATGCATGATTTGTTAGTAGAAATGGGACGAGGGATTGTTAACCAAGAAAATCGCCCTGGAAAAAGAAGTCGATTATGGGACCCTGAGGAAGTGTATGATGTATTGAAATATAACAAGGGAACTGAAGTTGTTGAAGTTATAAGTTTCGATATCCATGTTTCTAAAATTAAGGATCTCTACTTGAGCTCTGATTCTTTTAGAAGAATGATCAACTTAAGATATCTTCATATCAACTATGATGTTAAAAGTAGAAGCAAGGTGCACTTCCCTAAAGGTCTTGAATGGTTATCTGATAAATTGAGGTACCTTCATTGGGAAGTATTTCCACTTAAGTCTTTACCATCGGCCTTCTGTCCTGAAAGGCTTGTAGTACTTAAAATGGCCGGTAGCAAGCTTAGAAAGCTTTGGGATGGAATTCAGAAGTTGGACAATTTAATGATGATTGATCTTGATGGCTCCAAACACCTGATTGAGATCCCAGACTTATCAAGGGCACCAAATCTTCAAATAGTGAATCTTTCTGATTGTGAGAGTCTCCGTCAACTGCATCCATCCGTTTTCACTTGCCCCAAGCTTATAGAACTGCATTTATATCATTGCAGAAAGATTAAGAGCGTGAAAACTGACATTCATTCAAAATCTCTCGAATTACTCAATCTCTCTGATTGTTATTCTCTTGTTGAATTTTCGGTGACATCGGAGAAAATGACATCGTTGTCGTTAAGTGGCACTGCTATATGTGAATTTCCTTCATCAATATGGCATAATAGCAAGCTCTCTCAACTCTTTCTTGAGGAATGTAAGAAGCTTAAGATTGTTAGGAAGAAGTTATCAACTGATCTAGGATTGAGGTCTCTTCCATTTTTGAACCTTTCAGGATGCACTGAAATCAATACATCAAATTTGTGGTTCATCCTTGATGGCATGCCATCTTTATGTAAGCTAGATTTAAGACAGTGCTGCAACTTAGAAACCCTCCCGGATAACATCCAAAACAATTCATTATTAGAAGTTCTGAATTTAGATGGATGTAGTAAACTGAAGTCCCTACCAAAGCTTCCTACATCCTTGAAACACTTGACAGCTTTTAACTGCACTTATCTAGACACAAACATATTACACAAATTCCACTTCAACACTTATCTAGACACAACAAACATATTACATGAATTCTACTCCAACAGAAAGGATATCTGTTACCTTCCAGGTGGCCAAGTTCCGTGTGAGTTTGATTATCAGACAACAAAGGCTTCAATAGACATCCCCCCTATTCCAAAATCTGGCTTGTGTGGTTTCATTTTTTGCATTGTTCTCTCTAAGGGCTTTAATTGTTATGGTCAAAGAGTAGATTGTACTATCTACGAGCATGGAAAAAAAATCCTTGACTTGGATGAAGTTTTTGTCATTGAAAATACTTTGGGAAAGGCAGAGACATTAATTTTAGATCATGTATTGTTATGTTCGTGGTCTGGTGATAATTACAAATTGGTGAATATGGGGAATGAAAGTGATCATTACAACCTTTCATTTGAATTCAAACATTCAAACATTCAAACATTTGAATGGTCAAGTGAGGGGATAAAGGGTTGTGGTGTCTTCCCTGTATATGGCTTGGAACATAGTTTGCGGTTGGATGCAGATAGAAGCAGTAGTGGAGTTGAAATTGTTGAATTACAATCCAGTGCTCAAGTTTCTCGTGAGTCTGAAATTGATGAGGATGATATATTAAAGTTACTAAATCGATTCATTTTAGTTGAGTTGGATGTTGATGAAGTAAACAAAGCTAGTTCTGTTTTTGATTTGTCTGTTATTGTTGAGTTAATACATCAAGCAATTGGAGCTGAGTTGGATGTTGATGAGTCTGGTATTATAGAGTTACTACAGCAAGCACTCAAAGCTGGTTTTGATATTGATAAGTCTGATATTGATGACTTAATACATCAAGCAATTGGAGATAAGTTTGATATTGATAAGTATGATATTGATGACTTAATATATGAAGTATATGGAGGTGAAGATAGAGACCAACAACAAATTCCCCCAAAAGAAAAGGAGGCTATACTGATGATAATGAAGTTGAAGTTAGAGGCTCTACCAATGAAAATAAAGATGAACAACAGGATGTTAATAGCATTCTTATTTTTGTTGGAAGTAACCCTCTTGTTCCTACAGATGAAAATGAAGATGAACATCAACAAGTTCATATGTAGAGACTCTACAGATAAAAAAGAAAATGAAAAAGAGGACTTGGATGATAAATCTTCTTGTGCATGTTCAATTGGTCTTTTGTTGCAAAACCTTCTAGAAGAGTTTAAACGTTATTTCACTTGA 3438 0.3595 MAMQLYTDASSSMSKDKLRKWRNALTEAANLSGWDSQNYRIESNFIKAIVEDVFTKLNRKLPLHVNKDIVGIEKKYKEIELFLKNGSSDVRTLGLWGMGGIGKTTLAKYAYTKLSFQFERRCLLENVRQKSNNCEPSDVRKLLLSKLFELPLNSPYVETPILERRLACEKSLIVLDDVSTLEQAEHLNNMCLGPGSRLIVTTRDKQIFSQFDECQIYEVEGLDKDDSLQLFCWHAFKTKHAKVGYEELIERAIWYCRGNPLALKVLGANFRTKSKEVWESGLEKLKKIPDRGIHKVLKLSFDDLDDTQKNIFLDIACFFGSRASNNVNYIHGGYLTDILEACDFFAVSGLDVLQNKALITRNDDDDYIEMHDLLVEMGRGIVNQENRPGKRSRLWDPEEVYDVLKYNKGTEVVEVISFDIHVSKIKDLYLSSDSFRRMINLRYLHINYDVKSRSKVHFPKGLEWLSDKLRYLHWEVFPLKSLPSAFCPERLVVLKMAGSKLRKLWDGIQKLDNLMMIDLDGSKHLIEIPDLSRAPNLQIVNLSDCESLRQLHPSVFTCPKLIELHLYHCRKIKSVKTDIHSKSLELLNLSDCYSLVEFSVTSEKMTSLSLSGTAICEFPSSIWHNSKLSQLFLEECKKLKIVRKKLSTDLGLRSLPFLNLSGCTEINTSNLWFILDGMPSLCKLDLRQCCNLETLPDNIQNNSLLEVLNLDGCSKLKSLPKLPTSLKHLTAFNCTYLDTNILHKFHFNTYLDTTNILHEFYSNRKDICYLPGGQVPCEFDYQTTKASIDIPPIPKSGLCGFIFCIVLSKGFNCYGQRVDCTIYEHGKKILDLDEVFVIENTLGKAETLILDHVLLCSWSGDNYKLVNMGNESDHYNLSFEFKHSNIQTFEWSSEGIKGCGVFPVYGLEHSLRLDADRSSSGVEIVELQSSAQVSRESEIDEDDILKLLNRFILVELDVDEVNKASSVFDLSVIVELIHQAIGAELDVDESGIIELLQQALKAGFDIDKSDIDDLIHQAIGDKFDIDKYDIDDLIYEVYGGEDRDQQQIPPKEKEAILMIMKLKLEALPMKIKMNNRMLIAFLFLLEVTLLFLQMKMKMNINKFICRDSTDKKENEKEDLDDKSSCACSIGLLLQNLLEEFKRYFT 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02540 1145 PRINTS Disease resistance protein signature 165 179 - -
Trre5g02540 1145 PRINTS Disease resistance protein signature 256 270 - -
Trre5g02540 1145 PRINTS Disease resistance protein signature 92 107 - -
Trre5g02540 1145 PRINTS Disease resistance protein signature 509 525 - -
Trre5g02540 1145 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 315 IPR027417 -
Trre5g02540 1145 Gene3D Ribonuclease Inhibitor 402 577 IPR032675 -
Trre5g02540 1145 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 660 IPR044974 GO:0006952
Trre5g02540 1145 Gene3D - 3 58 IPR035897 -
Trre5g02540 1145 SUPERFAMILY "Winged helix" DNA-binding domain 293 405 IPR036390 -
Trre5g02540 1145 Pfam Leucine Rich Repeat 491 509 IPR011713 -
Trre5g02540 1145 SUPERFAMILY L domain-like 425 755 - -
Trre5g02540 1145 Pfam NB-ARC domain 78 287 IPR002182 GO:0043531
Trre5g02540 1145 Gene3D Ribonuclease Inhibitor 579 742 IPR032675 -
Trre5g02540 1145 Gene3D - 221 305 IPR042197 -
Trre5g02540 1145 Gene3D - 59 217 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02540 Trre-Chr5 19867189 19872842 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02540 15 733 WRKY Transcription Factor Family AT4G12020 32.389 2.48e-80 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02540 - - cam:101499873 893.264