Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02529 ATGGATGGCATAAGAAAGACCACTCCAGCTAAAGATTTATATGTTAAACCGCGTTCTCACCCTCAATTTAATAAGCCGAAAGTAGAGTTTGTGAGTGGAGTCCAAAAACCTGAGAGGAACAACCTTGTTTTCTTTGAAGGAAGTTCTTATAATTTTGATCTTGAAGACTTACTTAGAGCTTCGGCAGAAGTTCTTGGAAAAGTTAGCTATGGCAGCTCATATAAGACTACATTATTACTGGAGGAGGCAACGATAGTTGTGGTGTTAAGGTTGAAAAAAATTGTGGTAGGCAAAAAGGAGTTTGAACAACATATGGAGATTCTAGAAAGGGTCGGACAACACACAAACGTTGTGCCGCTTCGCGCTTATTATTTTTCGAAAGATGAAAAATTTATCGTTTATGACTATGTCCCAGCCGGCAACTTATCCACACTCTTGCATGGAAGTCAATCAGGTGGAAGAACTCCATTAGATTGGGACTCAAGAGTAAAAATTTCTCTTGGAACTGCAAGAGGAATTGCGCACATCCATTCTGTCGGAGGCACCGAATTCACACATGGAAATATCATGTCCTCAAATGTTCTCCTCAACCAAGATAACGAAGGGTGTATTTCTGATTTTGGCCTGACCTCACTTATCAATGTTCCTGCAAAACCTTCTGGAGCTGCCGGTTATCACGCTCCTGAGGTGATTGAAACTGGTATGCACTCTCATAAATCAGATGTCTACAGCTTTGGTATCCTCCTTCTTGAATTGGTTACAGGTAAATCGCCTCTACAATCTCCTGGACATGATGATATGGACGTTGATCTCCCTAGGTGGGTTTACTCTGTTGTTCGGGAGAAATGGATAGCTGAGGTTTACGATGTTGAGCTAATGAGGTACCAAAATATGGAAGAAGGAATGTTGCAAATGTTACAAATTGCCTTGGATTGTGTATCAAAGAGGCCTGATGCGAGACCTAACATGGTAGAAGTGGTAAGAATGATCGAAGAGATCCAGCAATCTGACTTAGAGTCAGAGAGGCGACCGTCTTCCGAAGAGAATAAATCTAAGGACACAAATGTTCAGACTCCATAG 1080 0.4148 MDGIRKTTPAKDLYVKPRSHPQFNKPKVEFVSGVQKPERNNLVFFEGSSYNFDLEDLLRASAEVLGKVSYGSSYKTTLLLEEATIVVVLRLKKIVVGKKEFEQHMEILERVGQHTNVVPLRAYYFSKDEKFIVYDYVPAGNLSTLLHGSQSGGRTPLDWDSRVKISLGTARGIAHIHSVGGTEFTHGNIMSSNVLLNQDNEGCISDFGLTSLINVPAKPSGAAGYHAPEVIETGMHSHKSDVYSFGILLLELVTGKSPLQSPGHDDMDVDLPRWVYSVVREKWIAEVYDVELMRYQNMEEGMLQMLQIALDCVSKRPDARPNMVEVVRMIEEIQQSDLESERRPSSEENKSKDTNVQTP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02529 359 FunFam pollen receptor-like kinase 1 29 136 - -
Trre5g02529 359 ProSiteProfiles Protein kinase domain profile. 59 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g02529 359 Gene3D Transferase(Phosphotransferase) domain 1 137 358 - -
Trre5g02529 359 MobiDBLite consensus disorder prediction 335 350 - -
Trre5g02529 359 Gene3D Phosphorylase Kinase; domain 1 27 136 - -
Trre5g02529 359 PANTHER OS05G0588300 PROTEIN 33 347 - -
Trre5g02529 359 Pfam Protein tyrosine and serine/threonine kinase 63 329 IPR001245 GO:0004672|GO:0006468
Trre5g02529 359 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 137 344 - -
Trre5g02529 359 SUPERFAMILY Protein kinase-like (PK-like) 63 331 IPR011009 -
Trre5g02529 359 MobiDBLite consensus disorder prediction 335 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02529 Trre-Chr5 19688770 19689849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02529 4 357 Receptor kinase-like Gene Family AT5G58300 63.559 2.38e-161 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre5g02529 PK_Tyr_Ser-Thr 6.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02529 - - gmx:100796171 522.702