LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g02522	ATGGCTTACAATCTGAAATTGTTCTCAATTACACTTCTGTTCTGCATAATCTTTTCACCAACAGAAACAGCATCAACATTCAGCCATTACAATTGCACAAGCATTCAAACATTTAGTCCAAATAGTAACTACAAAACCAATCTAAACAAACTCTTATCAACACTTTCATCGAAAGCTTCTGATACAATCAACCTTCGCTACTACAATACTAGTATTAGTACAATCGATGAAACAAAAGACACAATCTATGGTCTTTTCATGTGCATAGGATACACAAATTACTGTGGAGAATGTGTTAAAAACTCTGCCAAAACACTTACCTCAATGTGCGATTCGAAAAAAGAAGCTATAATTTGGTCCGATGAATGCATGGTGCGTTATTCCAATCGATCTTTCTTCGACATTATGGAAGAATCTCCATCACGGTGTGTTCAAGACTCATTGTATTATCAAGGTTCATTGGATGGATTCAACAAAATGCTAAGTTCTTTAATGGTAGATCTTGTAACACAAGTAAATGAAGTTTCAATGGGAAAAAAGGCTACCAAATATGTTCTCAAGAAATCAATTTATTTCGAGGATAAATTGTTGCATGGACTTGCTCAGTGCATACCAGATATCTCTAATGATAACTGCATGAAGTGTTTAAAGGATGCTATTGATTATCTTCAAAATTCATGTGCTAAAGGAAAGATTAGTGGAAGTGTTTTATATCCAAGTTGTATAGTTAGATATGATCCTTATCCATTTCATGCACAACCTATAGGAGAAAAAAAGAAAATTGGACCAAACCTATATTTCATAGTTTTTCATATTATTGCTCCTGTCTCGATTTTCTTTCTCGCGGTATTCCTTTTCGTGTATTATGCGCTATATAGGAGAGCAAGGAAGAATCTCAAGTACCAAAAACAAAATTTTGGGGAAGATATTTCATCAGAAGTAAACACTCTGCAATTTGATTTCAATATGATTCGACTAGCGACAAACAAGTTTTCTGATGATAACAAGATAGGAGAAGGTGGTTTTGGAGATGTTTATAAGGGAATGTTTCCTAATGGATTTGAAATAGCAGTGAAGAGGCTCATAAGAAATTCAAGTCAAGGAGCTTTGGAATTTAAGAATGAAGTGTTATTAATAGCAAAACTTCAACACAGAAATCTTGTGAGACTGTTAGGATTTTGCATTCAAAGGAATGAGAAGATACTAATTTATGAATATATGCACAACAAAAGCCTTGATTATTATCTATTCAGCCCTGAAAACCATAAAATATTAACTTGGCATGCACGTTACAAGATTATAAGAGGAATTGCGCGAGGTATTCTTTATCTCCATGAGGATTCTCATCTAAAAATCATACATTGTGATCTTAAACCCAGCAACATTTTGTTGGATGACAAAATGAATGCAAAGATATCAGATTTTGGCTTGGCAAGGATTGTTGCCATTGATCAAATGCAAGGAAATACTAGTATAATTGCTGGAACATATGGTTACATGTCTCCCGAATATGCAATGCTTGGCCAATTTTCTGAGAAATCTGATGTATTCAGCTTTGGAGTTATAATTCTTGAGATCGTCAGTGGAAAAAGAAATGTCGATTATAATGGAGTAAATTCCATTGATGACCTCGTGAGCCATGCATGGAAGAAATGGAGGGAAAATAAGGAATTGGAATTATTAGATGCTGCATTGACATACTCATTCTCAGAAACAGAAGTATATAGGTGCATCCAAATTGGTCTACTATGTGTGCAAGAAAATCCAGATCAAAGACCTACTATGGCAACGATTGCTTTGTATTTCAACTGTGATTCAATAGATCTACCATGCCCTCAACAGCCACCATTTTACATGCGTGGAAAAATAGAACCAAGGGTAGCTAGACCAAGGAGTTATTCAGTTACAAGGTTTTAA	1917	0.3474	MAYNLKLFSITLLFCIIFSPTETASTFSHYNCTSIQTFSPNSNYKTNLNKLLSTLSSKASDTINLRYYNTSISTIDETKDTIYGLFMCIGYTNYCGECVKNSAKTLTSMCDSKKEAIIWSDECMVRYSNRSFFDIMEESPSRCVQDSLYYQGSLDGFNKMLSSLMVDLVTQVNEVSMGKKATKYVLKKSIYFEDKLLHGLAQCIPDISNDNCMKCLKDAIDYLQNSCAKGKISGSVLYPSCIVRYDPYPFHAQPIGEKKKIGPNLYFIVFHIIAPVSIFFLAVFLFVYYALYRRARKNLKYQKQNFGEDISSEVNTLQFDFNMIRLATNKFSDDNKIGEGGFGDVYKGMFPNGFEIAVKRLIRNSSQGALEFKNEVLLIAKLQHRNLVRLLGFCIQRNEKILIYEYMHNKSLDYYLFSPENHKILTWHARYKIIRGIARGILYLHEDSHLKIIHCDLKPSNILLDDKMNAKISDFGLARIVAIDQMQGNTSIIAGTYGYMSPEYAMLGQFSEKSDVFSFGVIILEIVSGKRNVDYNGVNSIDDLVSHAWKKWRENKELELLDAALTYSFSETEVYRCIQIGLLCVQENPDQRPTMATIALYFNCDSIDLPCPQQPPFYMRGKIEPRVARPRSYSVTRF	638

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g02522	638	CDD	STKc_IRAK	337	599	-	-
	Trre5g02522	638	Gene3D	Phosphorylase Kinase; domain 1	292	406	-	-
	Trre5g02522	638	Pfam	Protein kinase domain	332	598	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g02522	638	ProSiteProfiles	Gnk2-homologous domain profile.	138	250	IPR002902	-
	Trre5g02522	638	ProSiteProfiles	Protein kinase domain profile.	331	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g02522	638	SMART	serkin_6	331	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g02522	638	FunFam	cysteine-rich receptor-like protein kinase 10	407	609	-	-
	Trre5g02522	638	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	35	618	-	-
	Trre5g02522	638	SUPERFAMILY	Protein kinase-like (PK-like)	315	621	IPR011009	-
	Trre5g02522	638	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	452	464	IPR008271	GO:0004672\|GO:0006468
	Trre5g02522	638	ProSiteProfiles	Gnk2-homologous domain profile.	26	132	IPR002902	-
	Trre5g02522	638	Gene3D	-	141	250	IPR038408	-
	Trre5g02522	638	Gene3D	-	24	132	IPR038408	-
	Trre5g02522	638	Pfam	Salt stress response/antifungal	155	246	IPR002902	-
	Trre5g02522	638	Pfam	Salt stress response/antifungal	32	129	IPR002902	-
	Trre5g02522	638	ProSitePatterns	Protein kinases ATP-binding region signature.	337	359	IPR017441	GO:0005524
	Trre5g02522	638	Gene3D	Transferase(Phosphotransferase) domain 1	407	606	-	-
	Trre5g02522	638	FunFam	Cysteine-rich receptor-like protein kinase 10	293	406	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g02522	Trre-Chr5	19644163	19646916	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g02522	4	632	Receptor kinase-like Gene Family	AT4G05200	42.485	6.18e-176	514

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre5g02522		Pkinase	1.3e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g02522	-		-	mtr:11443024	1032.71