Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02515 ATGTCTTCTTTGTTTTCCATGTACCAATCCAAAGGGGTGGATCAAAGGAATGAAACAAAAGGTTATAGTGAAGAATTTCAAGCAATGTTAGATAGATTGGAGCAAGAAGATAGTTATGAAGATTGTAACTTAATGTTGGAGAAGAAAAGAAGACTTGGTCATGATCAAGTAAAAGCCTTAGAAAAGAGTTTTGAGTTGGATAATAAGTTAGAGCCAGAGAGAAAAGTTAAGTTAGCTGAAGAATTAGGCTTGCAACCTAGACAAGTTTCAATTTGGTTCCAAAATCGTCGAGCTCGTTCGAAAACCAAACAATTAGAAAGAGATTATGGTGTTCTTAAGTCCAATTTTGATGTTCTTAAGGTTGAGTATAGTAATCTTCAACAAGAGAATGAAGCACTTACCATAAAGTTAAGAGAGTTGAAAGAAAAATTGTTAAGAGTTGAAAATAATGAGTTAGAGAAAGAAGAATATCCAATTTCAAGAGGTAGAGAAAGAGGAGGTTCAGAAAGCAATTCAAGTGGTGTGATTAAGGAAGAAATTAGTAATGTTGATTCTCCTTTGTGTTTCAATGGATCTTTGCCAAGTTCAATGATAAACATGGTTCATTATTATGATTCAAAAGGTTCACCTGAGAGAGCTTTTCAGAATCACTTTATGAGAATGGAGGAGCAAAATTTCTTTAGTAATAGTGAATTATGCAATTTCTTTTCTGTTGATCAATCTCCTACTTTGTAA 735 0.3306 MSSLFSMYQSKGVDQRNETKGYSEEFQAMLDRLEQEDSYEDCNLMLEKKRRLGHDQVKALEKSFELDNKLEPERKVKLAEELGLQPRQVSIWFQNRRARSKTKQLERDYGVLKSNFDVLKVEYSNLQQENEALTIKLRELKEKLLRVENNELEKEEYPISRGRERGGSESNSSGVIKEEISNVDSPLCFNGSLPSSMINMVHYYDSKGSPERAFQNHFMRMEEQNFFSNSELCNFFSVDQSPTL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02515 244 CDD homeodomain 48 104 IPR001356 GO:0003677
Trre5g02515 244 Pfam Homeobox associated leucine zipper 103 144 IPR003106 GO:0006355|GO:0043565
Trre5g02515 244 MobiDBLite consensus disorder prediction 1 20 - -
Trre5g02515 244 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 27 177 IPR045224 GO:0003700
Trre5g02515 244 ProSiteProfiles 'Homeobox' domain profile. 43 103 IPR001356 GO:0003677
Trre5g02515 244 ProSitePatterns 'Homeobox' domain signature. 78 101 IPR017970 GO:0000981|GO:0006355
Trre5g02515 244 Gene3D - 47 110 - -
Trre5g02515 244 SMART HOX_1 46 107 IPR001356 GO:0003677
Trre5g02515 244 Pfam Homeodomain 48 101 IPR001356 GO:0003677
Trre5g02515 244 FunFam homeobox-leucine zipper protein ATHB-6-like 51 97 - -
Trre5g02515 244 MobiDBLite consensus disorder prediction 1 16 - -
Trre5g02515 244 PRINTS Lambda-repressor HTH signature 83 99 IPR000047 GO:0003677
Trre5g02515 244 PRINTS Lambda-repressor HTH signature 74 83 IPR000047 GO:0003677
Trre5g02515 244 SUPERFAMILY Homeodomain-like 48 114 IPR009057 -
Trre5g02515 244 Coils Coil 116 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02515 Trre-Chr5 19565647 19566626 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02515 7 144 Homeobox Transcription Factor Family AT5G65310 57.718 1.47e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre5g02515 Homeodomain 5.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02515 K09338 - cave:132184564 237.269