Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02514 ATGAAAAGGTTCAATAATTCAGAATCTATGTCTTCTTTGTTTTCCATGTACCAATCCAAAGGGGTGGATCAAAGGAATGAAACAAAAGGTTATAGTGAAGAATTTCAAGCAATGTTAGATAGATTGGAGCAAGAAGATAGTTATGAAGATTGTAACTTAATGTTGGAGAAGAAAAGAAGACTTGGTCATGATCAAGTAAAAGCCTTAGAAAAGAGTTTTGAGTTGGATAATAAGTTAGAGCCAGAGAGAAAAGTTAAGTTAGCTGAAGAATTAGGCTTGCAACCTAGACAAGTTTCAATTTGGTTCCAAAATCGTCGAGCTCGTTCGAAAACCAAACAATTAGAAAGAGATTATGGTGTTCTTAAGTCCAATTTTGATGTTCTTAAGGTTGAGTATAGTAATCTTCAACAAGAGAATGAAGCACTTACCATAAAGTTAAGAGAGTTGAAAGAAAAATTGTTAAGAGTTGAAAATAATGAGTTAGAGAAAGAAGAATATCCAATTTCAAGAGGTAGAGAAAGAGGAGGTTCAGAAAGCAATTCAAGTGGTGTGATTAAGGAAGAAATTAGTAATGTTGATTCTCCTTTGTGTTTCAATGGATCTTTGCCAAGTTCAATGATAAACATGGTTCATTATTATGATTCAAAAGGTTCACCTGAGAGAGCTTTTCAGAATCACTTTATGAGAATGGAGGAGCAAAATTTCTTTAGTAATAGTGAATTATGCAATTTCTTTTCTGTTGATCAATCTCCTACTTTGTAA 762 0.3281 MKRFNNSESMSSLFSMYQSKGVDQRNETKGYSEEFQAMLDRLEQEDSYEDCNLMLEKKRRLGHDQVKALEKSFELDNKLEPERKVKLAEELGLQPRQVSIWFQNRRARSKTKQLERDYGVLKSNFDVLKVEYSNLQQENEALTIKLRELKEKLLRVENNELEKEEYPISRGRERGGSESNSSGVIKEEISNVDSPLCFNGSLPSSMINMVHYYDSKGSPERAFQNHFMRMEEQNFFSNSELCNFFSVDQSPTL 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02514 253 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Trre5g02514 253 Gene3D - 56 119 - -
Trre5g02514 253 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 27 186 IPR045224 GO:0003700
Trre5g02514 253 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Trre5g02514 253 FunFam homeobox-leucine zipper protein ATHB-6-like 60 106 - -
Trre5g02514 253 Coils Coil 125 166 - -
Trre5g02514 253 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Trre5g02514 253 CDD homeodomain 57 113 IPR001356 GO:0003677
Trre5g02514 253 SMART HOX_1 55 116 IPR001356 GO:0003677
Trre5g02514 253 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Trre5g02514 253 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Trre5g02514 253 Pfam Homeobox associated leucine zipper 112 153 IPR003106 GO:0006355|GO:0043565
Trre5g02514 253 SUPERFAMILY Homeodomain-like 57 123 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02514 Trre-Chr5 19565620 19566626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02514 16 153 Homeobox Transcription Factor Family AT5G65310 57.718 1.54e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre5g02514 Homeodomain 5.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02514 K09338 - cave:132184564 248.44