Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02507 ATGGATCAAGAGATTGAAGTTTCACCATTTTTCCTTTGTCCCATTTCATTACAACTCATGAAAGATCCAGTTACTGTCTCAACAGGCATAACCTACGACAGACAAAGCATTGAAAAATGGCTATTTTCATCTCAAAACAAAACATGTCCTGTCACTAAACAACAACTCTCACATGATGATAATAATCTCATTATTCTCACTCCAAATCACAATCTTCGTAGACACATTCAAGCATGGTGCACTATTAACACTTCTTATGGAATTCAAAGAATTCCAACTCCAAAACCACCAACAACAAAAACCCTTATAGAGAAACATCTCAAAGAAGCTTCTGATTCTCCTCATTTGCTTATTCAATCCCTCAGAAACCTTAAAACAATCGCGTCCGAGAGCGAAACCAATCGAAGATGTATCGAATCGGCCGGCGCTGTTGAATTCTTAGCATCAGTAGTAACAAAAAACAACACATGTTCTTCATCTTCATGTTCAACAACTGAGTTTGTTCTTGATGATGATGATGTTGAAGGTTTTGCTTTTGACTTCAGAGTAGATGCAGAAGATGAAGCTATAAACATTCTTTACAATCTTCATTTAACAGAACAAGGTTTGATAACTCTCTTAAACTTCAAAAATGGAGAATTTTTAGACTCTTTATTGAGATTAATGCAAAAGGGTAACTACGATTCAAGAACATATTCAGTTTTTCTATTGAAATCTATGTCAAAAGTTGCTGATCCATCAAAACTAGCATCGAATCTAAAGACCGAGTTTTTCGTCGAATTAGTCCAGCTTCTCAAAGATCAAATATCAAAAAAGGCATCAAAAGCAACACTACAAACACTAATTCAACTCGTCGAATTCGGAAGAAACAGAATAAGAGCAGTGGAATCAGGTTGTGTTACTATTTTAATAGAACTTCTTCTTGATTGCAAAGAAAGAAAACCATGTGAGATGATTTTGGTGCTTTTAGAGATGTTATGTCAATGTGCTGATGGAAGATTAGAGCTATTAAGCCATGGTTGTGGATTAGCTATTGTTTCAAAGAAGATTCTAAGGGTTTCAATTTTGGCTAATGATAGAGCAGTGAGGATTCTTCTATCTGTTTCAAGATTTTCTGCAACACATTTTGTTGTTCAAGAAATGTTGCAAATAGGTGTTGTTGCTAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAATAAGGCTAAGGAGAAAGCAAAAGAGATACTTAAATTGCATGCAAATTCTTGGAGTAATTCTCATTGTATACCTTTTAATTTACTTGCTTCATACCCAACAACTAGATCCGAAAATCGTGGAAAGAAAGAACGAACGTCGATTGGAGCTAGCGCCATGTTATACAGCGGTGGATGCGATTTTGGAGATAAGATGATGGACTAG 1401 0.3555 MDQEIEVSPFFLCPISLQLMKDPVTVSTGITYDRQSIEKWLFSSQNKTCPVTKQQLSHDDNNLIILTPNHNLRRHIQAWCTINTSYGIQRIPTPKPPTTKTLIEKHLKEASDSPHLLIQSLRNLKTIASESETNRRCIESAGAVEFLASVVTKNNTCSSSSCSTTEFVLDDDDVEGFAFDFRVDAEDEAINILYNLHLTEQGLITLLNFKNGEFLDSLLRLMQKGNYDSRTYSVFLLKSMSKVADPSKLASNLKTEFFVELVQLLKDQISKKASKATLQTLIQLVEFGRNRIRAVESGCVTILIELLLDCKERKPCEMILVLLEMLCQCADGRLELLSHGCGLAIVSKKILRVSILANDRAVRILLSVSRFSATHFVVQEMLQIGVVAKLCLVLQVDSGNKAKEKAKEILKLHANSWSNSHCIPFNLLASYPTTRSENRGKKERTSIGASAMLYSGGCDFGDKMMD 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02507 466 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Trre5g02507 466 Gene3D - 98 436 IPR011989 -
Trre5g02507 466 PANTHER WDSAM1 PROTEIN 3 424 IPR045185 GO:0061630
Trre5g02507 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Trre5g02507 466 Pfam U-box domain 8 81 IPR003613 GO:0004842|GO:0016567
Trre5g02507 466 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Trre5g02507 466 SUPERFAMILY ARM repeat 108 394 IPR016024 -
Trre5g02507 466 CDD RING-Ubox_PUB 9 60 IPR045210 -
Trre5g02507 466 SUPERFAMILY RING/U-box 5 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02507 Trre-Chr5 19526550 19531347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02507 1 432 U-box Gene Family AT3G52450 52.955 3.24e-155 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02507 - - tpra:123902305 731.48