Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02505 ATGAAAGGAACAACGAGTTTGATATCATTCTTCTCGCTCTCGCGCCACCGTATTCTTCACTCTCAATACCGATTCTTCAACTCTTCTTCTTCTTCTTCACCATCATCATCATCACCTTCCTCTAACAAGCTATTCGTAGGAGGATTATCATGGTCAGTTGATGAAAAATCTCTCAAAGATGCTTTCTCTTCCTTTGGAGATGTCACTGAAGTGAGGATAGTGTATGATAAAGACAGTGGTAGAGCTAGAGGATTCGGGTTTGTCATCTTTTCAAATGAAGATGATGCAAAATCTGCAAAAGATGCTATGGATGGAAAGGCATTGTTAGGTAGACCTTTGAAGATAAATTTTGCTCTCGAGAAGGCCCGTGGTGGACCTGTTGTAGTTCCTCGGTTTTCAGATAATGGACGCTTTAACAGGCACTGA 426 0.4131 MKGTTSLISFFSLSRHRILHSQYRFFNSSSSSSPSSSSPSSNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLKINFALEKARGGPVVVPRFSDNGRFNRH 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02505 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Trre5g02505 141 SUPERFAMILY RNA-binding domain, RBD 26 127 IPR035979 GO:0003676
Trre5g02505 141 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 30 123 - -
Trre5g02505 141 SMART rrm1_1 43 116 IPR000504 GO:0003723
Trre5g02505 141 Gene3D - 19 124 IPR012677 -
Trre5g02505 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Trre5g02505 141 CDD RRM2_NsCP33_like 43 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02505 Trre-Chr5 19489767 19490376 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02505 40 121 C2H2 Transcription Factor Family AT2G19380 36.585 4.73e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02505 - - psat:127125499 199.134