Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02504 ATGAAAGGGACAACGAGTTTGATATCACTGTTCTCGCTCTCGCGCCAACGTATTCTTCGCTCTCAATACCGATTCTTCAACTCTTCTTCTTCTTCACAATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCACCTTCCTCTAACAAGCTATTCGTAGGAGGAATATCATGGTCAGTTGATGAAAAATCTCTCAAAGATGCTTTCTCTTCCTTTGGAGATGTCACTGAAGTGAGGATAGTGTATGATAAAGACAGTGGTAGAGCTAGAGGATTCGGGTTTGTCATCTTTTCAAATGAAGATGATGCAAAATCTGCAAAAGATGCTATGGATGGAAAGGCATTGTTAGGTAGACCTTTGAAGATAAATTTTGCTCTCGAGAAGGCCCGTGGTGGACCTGTTGTAGTTCCTCGGTTTTCAGATAATGGACGCTTTAACAGGCACTGA 504 0.4028 MKGTTSLISLFSLSRQRILRSQYRFFNSSSSSQSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSSNKLFVGGISWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLKINFALEKARGGPVVVPRFSDNGRFNRH 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02504 167 SMART rrm1_1 69 142 IPR000504 GO:0003723
Trre5g02504 167 SUPERFAMILY RNA-binding domain, RBD 58 153 IPR035979 GO:0003676
Trre5g02504 167 MobiDBLite consensus disorder prediction 26 69 - -
Trre5g02504 167 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 140 IPR000504 GO:0003723
Trre5g02504 167 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 146 IPR000504 GO:0003723
Trre5g02504 167 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 26 149 - -
Trre5g02504 167 Gene3D - 20 150 IPR012677 -
Trre5g02504 167 CDD RRM2_NsCP33_like 69 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02504 Trre-Chr5 19485757 19486444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02504 46 147 C2H2 Transcription Factor Family AT2G19380 32.353 3.91e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02504 - - psat:127125499 191.43