Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02499 ATGGATGTAATTTTTGAAGTGCAAAGAGGTAGACCATTCACAATTGAAGTAGGATTCTTTGATACAATTTTAGAAATCAAAGAAAAAGTTCAAAAGTATCAAGGAATTCCAATCTCCAAACAAACCCTAATCTTCAATGGCCAAATTCTCCAAGACGACGGAGACATTTGGAAATGCGGAATTTTTCAAAACTCGCGCATTCACCTCATGGTTGCCTCAGATTCCGATCATCACAAACCGCCGGTTGAAGATACCAAATTTCACCTCAACATCAAAATGCCTTTATCCAAATCCCACATTCCCATCGAAATCGACAAAAATGACACCGTTTTAAAGTTGAAAGAGAAAATTCATGACATTGATCAAAATAATGTCCCATTGAACAAAGTCATGTTGCACTCAACCGGAACCGAATTGCAAGACAATCAGTTGTTACGCGATTGTGAATTTTCGGAGAAAAATGAATTTGAGGTTAGTTTTAAGCCACCGGTGCCGACGGCACCAACGGTGGTTAATGGTGGAGGTGGAGGTGGAGCCTCGAAGAAATTGAAGCTGATGGTTAAGAGTGGAACAAAGAAAATTCCTGTGGAGATGAATGCTTCGGATAATGTTGGAGAATTAAGGAAAGAGCTTCAAAAATTGAATCAAATGCTTCAATTTCATCTTCCACAAGATGGTTACTTTTTCATTTATAAGCAAAATGTTATGGATGATGATAAGTCATTTCGATGGCATCATGTTAGTCAAGGTGATACCATTGAAATCTTTAATGGTAGTGTCACTGGTGGATCATGA 795 0.3811 MDVIFEVQRGRPFTIEVGFFDTILEIKEKVQKYQGIPISKQTLIFNGQILQDDGDIWKCGIFQNSRIHLMVASDSDHHKPPVEDTKFHLNIKMPLSKSHIPIEIDKNDTVLKLKEKIHDIDQNNVPLNKVMLHSTGTELQDNQLLRDCEFSEKNEFEVSFKPPVPTAPTVVNGGGGGGASKKLKLMVKSGTKKIPVEMNASDNVGELRKELQKLNQMLQFHLPQDGYFFIYKQNVMDDDKSFRWHHVSQGDTIEIFNGSVTGGS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02499 264 ProSiteProfiles Ubiquitin domain profile. 87 161 IPR000626 GO:0005515
Trre5g02499 264 ProSiteProfiles Ubiquitin domain profile. 183 262 IPR000626 GO:0005515
Trre5g02499 264 SUPERFAMILY Ubiquitin-like 178 256 IPR029071 -
Trre5g02499 264 SUPERFAMILY Ubiquitin-like 84 155 IPR029071 -
Trre5g02499 264 SMART ubq_7 183 258 IPR000626 GO:0005515
Trre5g02499 264 SMART ubq_7 1 72 IPR000626 GO:0005515
Trre5g02499 264 SMART ubq_7 87 161 IPR000626 GO:0005515
Trre5g02499 264 Gene3D - 86 161 - -
Trre5g02499 264 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Trre5g02499 264 CDD Ubl_ubiquitin_like 89 158 - -
Trre5g02499 264 Gene3D - 176 259 - -
Trre5g02499 264 PANTHER UV EXCISION REPAIR PROTEIN RAD23 180 261 - -
Trre5g02499 264 Gene3D - 1 70 - -
Trre5g02499 264 ProSiteProfiles Ubiquitin domain profile. 1 71 IPR000626 GO:0005515
Trre5g02499 264 PRINTS Ubiquitin signature 11 31 IPR019956 -
Trre5g02499 264 PRINTS Ubiquitin signature 32 52 IPR019956 -
Trre5g02499 264 Pfam Ubiquitin family 6 72 IPR000626 GO:0005515
Trre5g02499 264 Pfam Ubiquitin family 89 161 IPR000626 GO:0005515
Trre5g02499 264 Pfam Ubiquitin family 187 254 IPR000626 GO:0005515
Trre5g02499 264 FunFam Ubiquitin-like superfamily protein 1 72 - -
Trre5g02499 264 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Trre5g02499 264 Coils Coil 197 217 - -
Trre5g02499 264 CDD Ubl_ubiquitin_like 3 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02499 Trre-Chr5 19460224 19461018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02499 1 71 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 35.211 6.21e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02499 - - psat:127097496 396.356