Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02492 ATGCCTTCCGTCCTCTCGAAGTATTGCTTGGCTCCGAACCAACCTTGGAATTTTAGGCGGTTCCACAAGCTGCAACATCAAACTCTCCTTGTATCCAACTACCTCCAGCAGTCTCACAAGTTACCAAGTTTGATCACTGTTGCTTTCAATTGCCTCCCTGAAGATCTTCCAAGTTTTGCACTTCTTCAGCCACAATTGAAACATAACCACAAGGCATATCCAACAGATGTCAATGGATTGAACGAAGATGAATCTCTCAAGTTATTCTGTTGGAATGCCTTTAGAAAAAATTATCCTAAAGAAGGATATGAAAATCTCTCAGAAATTGCAACTGGATATTGTAGAGGCAATCCCCTTGCTTTAAAAGTTTTAGGTGTAAATTTTCGTAGAAAGAGCAAAAAAGTGTGGGAAAGTGAATTGGAAAAGCTCAAAAAGATTCCCAATCAGAGAATTCATGATGTGTTAAAATTGAGTTTTGATGACTTAGATACTACTCAACAAGACATATTTCTAGACATGGTATGCTTCTACGAATACTCTGAACTACGCGGATTTAGTGATCCACAGTACCTAAGAGCTGTATGGAATGCTTGCAATTTTTTTGCAATAAGTGGGGTAAAAGCCCTTCTATGTAAAGCACTCATAACAATTCCATGTTATGATAATATCATAATGCATGATTTGATAGTAGAAATGGGACGAGAGATTGTTAAGCAAAAATCTTCTAAAGACCCAGGAAGAAGAAGTCGATTGTGGAATCCCAAGGAAGTTTATCAAGTATTGAAATATAACAAAGGAACTGAAGTTGTTGAGGTTATACTATTCAATACTTCTGAAATTGGAGATTTAAACTTGAGTTCTGATTCCTTTAAAAGCATGATCAACTTAAGATTTCTTCATATCACAAATAATTTAATTCGGCGATATGAGAAAATATGCAGTAATGTGCACTTTCTTGAAGGTCTTGAGTGGTTGTCTGATGAATTGAGGCACCTTTATTGGGAAGGATTCCCACTTGAGTGTTTACCATCAACCTTTTGTGCTGAAAGGCTTGTGCTACTTAGCATGCGACATAGCAAGCTTAAAAAGCTCTGGAATGGAATTCAGAAGCTTGACAATTTAATGATTATTGATCTTGATTACTCCGAAGACCTGATTGAGATTCCGGACTTATCAAAGGCACCAAATCTTGAAATAGTATCCCTTACTGGTTGTGAGAGTCTTTGTCAACTTCATCCATCCATTTTCACTGTCCCTAAGCTTAGACAACTATGTTTAGATGGTTGCAAAAAGATTGAAAGCCTTAAAACTAACATTCATTCAAAATCTCTCCAAACACTCGATCTCACAGATTGTTCATCTCTTGTGGAATTTTCGGTGACATCGGAGGAAATGACGTGGTTGTCGTTACGTGACACCGCTATACATGAATTTCCTTCATCAATGTGGAATAATAGCAAACTCACTCATATTGATCTAATTCAATGTAAGAATCTTACCATTGTCGGAAAGAAGTTATCAAAGCATCCCGGATTAGGTTCTGTTACAGTTTTGAACCTTTCAGGATGCACACAAATCAATACATGGAATTTGTGGTTCATCCTAGATGGCATGCCATCTTTAAAAGAACTAAATTTGAGAGAGTGCTGCAATTTAGAAACTCTCCCTGACAACATCCAAAACAATTCAATGTTGCAAATACTCTATTTAGATTAA 1716 0.3683 MPSVLSKYCLAPNQPWNFRRFHKLQHQTLLVSNYLQQSHKLPSLITVAFNCLPEDLPSFALLQPQLKHNHKAYPTDVNGLNEDESLKLFCWNAFRKNYPKEGYENLSEIATGYCRGNPLALKVLGVNFRRKSKKVWESELEKLKKIPNQRIHDVLKLSFDDLDTTQQDIFLDMVCFYEYSELRGFSDPQYLRAVWNACNFFAISGVKALLCKALITIPCYDNIIMHDLIVEMGREIVKQKSSKDPGRRSRLWNPKEVYQVLKYNKGTEVVEVILFNTSEIGDLNLSSDSFKSMINLRFLHITNNLIRRYEKICSNVHFLEGLEWLSDELRHLYWEGFPLECLPSTFCAERLVLLSMRHSKLKKLWNGIQKLDNLMIIDLDYSEDLIEIPDLSKAPNLEIVSLTGCESLCQLHPSIFTVPKLRQLCLDGCKKIESLKTNIHSKSLQTLDLTDCSSLVEFSVTSEEMTWLSLRDTAIHEFPSSMWNNSKLTHIDLIQCKNLTIVGKKLSKHPGLGSVTVLNLSGCTQINTWNLWFILDGMPSLKELNLRECCNLETLPDNIQNNSMLQILYLD 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02492 571 Pfam NB-ARC domain 72 147 IPR002182 GO:0043531
Trre5g02492 571 Pfam Leucine Rich Repeat 351 369 IPR011713 -
Trre5g02492 571 SUPERFAMILY L domain-like 225 570 - -
Trre5g02492 571 Gene3D - 79 163 IPR042197 -
Trre5g02492 571 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 78 458 IPR044974 GO:0006952
Trre5g02492 571 PRINTS Disease resistance protein signature 439 455 - -
Trre5g02492 571 PRINTS Disease resistance protein signature 114 128 - -
Trre5g02492 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 172 IPR027417 -
Trre5g02492 571 FunFam Disease resistance protein (TIR-NBS-LRR class) 81 163 - -
Trre5g02492 571 Gene3D Ribonuclease Inhibitor 237 461 IPR032675 -
Trre5g02492 571 Gene3D Ribonuclease Inhibitor 462 571 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02492 Trre-Chr5 19347754 19351453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02492 101 529 WRKY Transcription Factor Family AT4G12020 34.240 1.43e-51 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02492 - - psat:127083478 582.022