Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02470 ATGGAGAGTTCAAACAATTTGGATAACTGTGATGGTAATTTTGATGACGAAGCTAATAGAGTTGATAACTCTAGTGGTGAACTTGCAAATTGGGAGCCTGTAACAGGGATGTCTTTTCCTTCTATAGATGAGGTGAAATTATTTTATAAAAAGTATGCTTCTATAAAGGGTTTTGGATGGAAGACTAGAACATCAAAGAAAGGAAAGAATGGAGAGATAAATTACATAATGTTATCATGCACAAGAGAAGGACATCGTGTGTCTGAAATTCCGTGTACATTGAAGACGCTTCCGACTAAGGTGAAAAATTGCCCTGCAAAGATTACTACAAAGTTGGAAAAGGATGGATTATGGTTTGACAAGTTGTGCAAACATTTCTATGAAGTTGCTGAAGAAGCTGCAGAGTTTGAAGATGCAACTAAGGTTCTCCATGAAAGATTATCTGAATTTAAATCTAATTTGTCTTCCTTGAGAGCTACAAATAATGATGTTAACCGAAGTTCCAACAATGACTTAAATCAAAATAACATTACTAGGATGGATGAAAATTTGACTACTGAAATTCGTAGTCCATTGCGAGTCACACGTAAAGGTCGTCCTCGAGAAAAGAGAACAATATCTGCAGTTGAAAAGGTTGTGCAAAGATGCAAGAAGAAGCGAACAAATAAAAGTAGAGACAAATCGACAACTAAGGAATGCAATACTGAAAGGGTGGAAATCAAAGTGAAAACTTATGTGCAGAATCAACTATTCAGTTTGTAA 762 0.3556 MESSNNLDNCDGNFDDEANRVDNSSGELANWEPVTGMSFPSIDEVKLFYKKYASIKGFGWKTRTSKKGKNGEINYIMLSCTREGHRVSEIPCTLKTLPTKVKNCPAKITTKLEKDGLWFDKLCKHFYEVAEEAAEFEDATKVLHERLSEFKSNLSSLRATNNDVNRSSNNDLNQNNITRMDENLTTEIRSPLRVTRKGRPREKRTISAVEKVVQRCKKKRTNKSRDKSTTKECNTERVEIKVKTYVQNQLFSL 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02470 253 Pfam FAR1 DNA-binding domain 48 118 IPR004330 -
Trre5g02470 253 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 11 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02470 Trre-Chr5 19250487 19252812 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre5g02470 FAR1 1.3e-06 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02470 - - mtr:112421975 148.673