Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02465 ATGGGCTGGAATATTGTTCATCAAGAATCCCCTAAAGACCCTGGAAGCAGAACTCGATTGTGGCTTCCCAATGAAGTGTATGATGTACTAAAATATAAAAAGGGAACTAAAGCAGTAGAAGGAATAACTTTAGATATGTCTAAAGTTGAGGATCTACATTTAAAGTCTAATTCCTTTACAGAAATGTCTGAGATGAGATTTCTCAAACTCTATTATGGAAAGTGCAACAGTACAAGTAATATATATCTTCCGGAAAACGGTATGGATTCATTGTCTGATAAACTGAGGTACCTTGAATGGCATAGATATTGTCTGAAGTCTTTGCCATCACAATTTAGTGGTAATTTGCTTGTTGAGCTTTCCATGCCTTACAGCAGCCTTCAAAAGCTTTGGGACGGAGTTCAGAATCTTGCAAATTTAAAGGAAATTGATCTTAGATTCAGCAATGAGTTGGTTGAGGTCCCAAACTTGTCTAAGGCTACGAATTTGGAATGGTTAGCACTTACTAGGTGTAGAAATTTGCGCGAAATCCATCCTTCCATTTTGTCTCTCAACAAGCTTAAAGATCTCGAATTAGAAGGTTGTACGAAGATTGAAAGATTTCGATCCGACAATCATTTAGATTCTCTTCAAACCATCCAACTCAGCAACTGCTCATCTCTGAAAGAATTCTCGGTCACTTCAAACAAACTCGAGAATCTGTGGTTAGATGGTACATCTATCCAAGAATTGCCCTCATCAATTTGGTGTTGCCAGAAACTGAAGATGATTGATCTTCACAATTGTGATAATCTTGTTGGTTTTGGGGAAAATAAAAACCATATAGAAATTGGATCTCTTAATACTCTGGTTCTTTCTGGCTGCAAAAAACTCAATGCATCAAATCTTTGTTTCAGCTTCAAAGCATGGCAATCAACTTTAACATCATTGGTTTTGGAAAATTGTTGCAATTTAGAGGCACTCCCTGATAGCATTGGTTTATTATCATCATTGCAATGCTTAAAACTAAGTGGAAGCAATGTTGAGAGATTGTCACCAAATATAAAAAATCTTCACAACCTTAAAGAGCTAAGTCAAATACAAGAAAGTGGAGCATGGGATAGTCCTAACAACATATCCTTTGAATTTTTGGTTGAAAATGAGGAGGGAGAATGGACAACAGAGAGAATAAAGGGTTGTGGGGTGTTCCCACTTTATCACAATTTTAAAGAGATGAATGTGTTGCATGTTAGAACAATTGGAAGTGGTCATAAAAATGAAGAGAATGAGACTAAGAAATTGGATCAAACTATTGTGACTCACATTCAGGATGAAAAAGTGGACTCCAATAATACATCTTCCTCTCACATTTTTGTAGTTCCAACAGTAAATGGTTGCAAGACAAAACCACAAAGTTTGGAGGAACATGATTTCTTTACAAATACAAGTTCAATACCACAGAATCAATTTGACACTGCAAGAGCTTCCAACATGAATCCAAATCAGATCATTGAAATGGTGTCAAAAGAAAAAGACTTGATCAATCCGCAACTCGGACAAGATTCTTGGGATCCAATTTCAGAGCTAGAGAGTTTGTTATGTGACAGTTATGATTTGTCTCCCATGTGCACCGACTCAAAAAATGTTTCGGTACTCGAAGATCCAAATGTGGCAACAATTCTTGAAAATTTAGAGACCCTTTTCGAGACACCACTTGAAATTGTCTCTTCAGACAATGAAGTGAAGCAAAAGTTTCATCAAATTTTGGAACAACTTGGCCAATTTGAAAACCAAATCCCTATTAGGCTTCATCATGTTATTTACAAGTTAAGAACTTTCATTGAAGGGGTTGATGTAAGATTTGTGAATGCTCAAAAAGCTATACAAGATTATGATCAATTGCTTCAATCAAGGTCTCTTATATCAAAGACATTGGAAAATGGCAAAGCTAGAGTAAAGCAAAATAATTGTGAAATATCTCAAGGTAAAATACAATTTGAAAAGATCAATTCTGAGATTGTTGAATTAGAACAAAAATTAACTGGTCTTGTTGAGATTAGAGACAAGCTGAAGAGAGATTTGGAGCAATGTGAATTGATAAATAACAAGATTAAGACAGAGGTTGCACAAGATTTGGTTCCACAATGCAGGATTGTCTTAACAAATTTGAAAAAGTGTGAAACTTCTTACAAAGTGGACTGA 2181 0.3567 MGWNIVHQESPKDPGSRTRLWLPNEVYDVLKYKKGTKAVEGITLDMSKVEDLHLKSNSFTEMSEMRFLKLYYGKCNSTSNIYLPENGMDSLSDKLRYLEWHRYCLKSLPSQFSGNLLVELSMPYSSLQKLWDGVQNLANLKEIDLRFSNELVEVPNLSKATNLEWLALTRCRNLREIHPSILSLNKLKDLELEGCTKIERFRSDNHLDSLQTIQLSNCSSLKEFSVTSNKLENLWLDGTSIQELPSSIWCCQKLKMIDLHNCDNLVGFGENKNHIEIGSLNTLVLSGCKKLNASNLCFSFKAWQSTLTSLVLENCCNLEALPDSIGLLSSLQCLKLSGSNVERLSPNIKNLHNLKELSQIQESGAWDSPNNISFEFLVENEEGEWTTERIKGCGVFPLYHNFKEMNVLHVRTIGSGHKNEENETKKLDQTIVTHIQDEKVDSNNTSSSHIFVVPTVNGCKTKPQSLEEHDFFTNTSSIPQNQFDTARASNMNPNQIIEMVSKEKDLINPQLGQDSWDPISELESLLCDSYDLSPMCTDSKNVSVLEDPNVATILENLETLFETPLEIVSSDNEVKQKFHQILEQLGQFENQIPIRLHHVIYKLRTFIEGVDVRFVNAQKAIQDYDQLLQSRSLISKTLENGKARVKQNNCEISQGKIQFEKINSEIVELEQKLTGLVEIRDKLKRDLEQCELINNKIKTEVAQDLVPQCRIVLTNLKKCETSYKVD 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02465 726 Pfam Leucine Rich Repeat 117 135 IPR011713 -
Trre5g02465 726 FunFam Disease resistance protein RPS4 36 229 - -
Trre5g02465 726 Gene3D Ribonuclease Inhibitor 229 373 IPR032675 -
Trre5g02465 726 Gene3D Ribonuclease Inhibitor 30 228 IPR032675 -
Trre5g02465 726 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 264 IPR044974 GO:0006952
Trre5g02465 726 Coils Coil 652 700 - -
Trre5g02465 726 SUPERFAMILY L domain-like 53 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02465 Trre-Chr5 19211995 19215407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02465 2 357 WRKY Transcription Factor Family AT4G12020 35.989 1.69e-46 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02465 - - psat:127083514 597.43