Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02413 ATGGACAAAGAAGGTGCTGAACTTCAAACTGTTGCAGTTTCAATGATATCAGATTCTTCTCTTCTTCATAATCAGTCCAGAAGACCTAGTCTCTCATCCTTACAAATACCAACAAGGACACTAGAAAGTGCATTATCTTCTTCTACTAAGACAGATGGTCCTACATTGTCAAGTCCAGGTTCCACTAGAGGACTCCCACCAAGGCCACATTCTACTACCAAAGTGAAGTCCTCTATGAGAAATTTACTTTCTGATAGGAGCTTTAGGACAAAGACTTGTTCACAAGATAGTGAAAAGACAGTTTTGATTGTTCCTGATACTTTATCATCTGATAATGGTCCTCTAGATAATAAGCCTTCAACTTCAAGGTCCCTTTCACTTAACAAGATTTTGTTCCCGTCATCGACAAAAGCTGCACATTCATTACCGGTTACTCCAATTGCAAATTCAGGCGCAGAGAATCTACATGGAAGAAATGTAGGGGGTGATTCCGATTTAAATAAAATGAAAGTGAATAAGCATATGACTAGATCATTTTCGGTTCCGGTTAACGTCAAGGCCACTAATTTAAGGCCTACAGATTCTAGGCGTCTGGTTCGTGTAATTTCAGTAAGACCACATCCAGCAACTACTGATGACAATTCAACTCGCAGTGATTCAATGCAAGAAATTGTCATTGAAGATGCTTCTGAGGATATTCCAGAAGAAGAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGCGGAAGGGGGAGATACTCTTAGGATGGACTGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAATAAGACATGTGATGTCTGCAAACAGGATGTCCGGAACCTTCCAGTAACACTTTTGAAAATTTCTAGCCCTCCAACTGTTGTTTGGCAGACATTGACTGCATCGCAGCAGAGAGCAGTAACAAATTACAGGATCTGGCAGGATGTACCAGTACTTGTGTTGGTCAGCATGCTTGCGTACTTTTGCTTTCTGGAGGAACTACTGGTTTCGGATTTGGGCTCACGTGCTCTCGCAATTTCATTGCCTTTCTCCTGCATTTTAGGCCTCCTTTCTTCTATGATTGCTTCAACCATGGTGAGCAGGAGTTACATATGGGCCTATGCTTGCTTCCAGTTTGCATTTGTCATCCTGTTTGCTCATATATTCTATTCTATACTTAATGTTAATGCGCTTTTCTCGATTCTGCTTTCAACATTCACTGGATTTGGAATTTCAATCAGCATGAATTCTCTACTAATGGAATATATTAGATGGAAAACAAATAGGCAGATTCAATCTGCTAATCAAAATATTATTTCGAGACAGCTGCAGCAGCAGCAGCAAGAAATTCAAAGACAACAACATCAACTGCAAAGGATGCTGCAAGAGCAGCACCAATGA 1440 0.4069 MDKEGAELQTVAVSMISDSSLLHNQSRRPSLSSLQIPTRTLESALSSSTKTDGPTLSSPGSTRGLPPRPHSTTKVKSSMRNLLSDRSFRTKTCSQDSEKTVLIVPDTLSSDNGPLDNKPSTSRSLSLNKILFPSSTKAAHSLPVTPIANSGAENLHGRNVGGDSDLNKMKVNKHMTRSFSVPVNVKATNLRPTDSRRLVRVISVRPHPATTDDNSTRSDSMQEIVIEDASEDIPEEEAVCRICLVELAEGGDTLRMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLPVTLLKISSPPTVVWQTLTASQQRAVTNYRIWQDVPVLVLVSMLAYFCFLEELLVSDLGSRALAISLPFSCILGLLSSMIASTMVSRSYIWAYACFQFAFVILFAHIFYSILNVNALFSILLSTFTGFGISISMNSLLMEYIRWKTNRQIQSANQNIISRQLQQQQQEIQRQQHQLQRMLQEQHQ 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02413 479 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 295 IPR013083 -
Trre5g02413 479 SMART ringv_2 239 288 IPR011016 GO:0008270
Trre5g02413 479 MobiDBLite consensus disorder prediction 18 86 - -
Trre5g02413 479 ProSiteProfiles Zinc finger RING-CH-type profile. 232 294 IPR011016 GO:0008270
Trre5g02413 479 PANTHER OS02G0165000 PROTEIN 23 458 - -
Trre5g02413 479 Pfam RING-variant domain 240 287 IPR011016 GO:0008270
Trre5g02413 479 CDD RING_CH-C4HC3_MARCH 240 288 - -
Trre5g02413 479 Coils Coil 449 476 - -
Trre5g02413 479 SUPERFAMILY RING/U-box 236 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02413 Trre-Chr5 18627147 18632075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02413 234 294 C3H Transcription Factor Family AT2G37950 46.774 3.12e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02413 - - gmx:100779396 650.203