Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02408 ATGGGGTTTAAAATTAAAATGAAAGAATTTGTTTTGTCTATCTTGATCTTCCTCATAATTCCAACACTAATAGCCGCAGAATGTACGTGCGATGAAGAAGATGAAGATAGAGACAAATCCAAAGCCCTACGTTACAAAATAGCTGCTTTAATATCGATACTAGTTGCAAGTGCAATTGGTGTTAGCATTCCACTTCTCGGAAAAGTGATACCCGCCTTAAGCCCCGAAAAAGATATATTTTTTATCATTAAAGCCTTTGCTGCCGGTGTGATATTGTCAACCGGTTTCATTCATGTACTTCCCGATGCTTTTGAGAATCTCACTTCACCTTGTTTAAAGGAACACCCTTGGGGAGATTTTCCATTCACTGGTTTCGTGGCTATGTGCACTGCTATGGGAACTCTTATGGTTGATACTTATGCGACTGCTTATTTTCAAAACCATTATAATAAAAAAGCACCTGCACAAGTTGAGAATCATGGTCATGGGTCAACCTCAGATGTGGAGAAGGATGCAAATCATGAGGGACATGTGAATGTTCATACTCATGCTTCACATGGTCATTCACATGGCCCTATTTCTTCGAATCCATCATCAGAACTTCTTCGTCATAGAGTTATATCACAGGTTTTGGAGTTGGGAATTATTGTTCACTCAGTCATAATAGGAATTTCTTTGGGTGCTTCAGAGAGTCCTAAAACCATAAGACCACTTGTAGCTGCGTTGACTTTTCATCAATTTTTTGAGGGCATGGGACTTGGAAGTTGTATAACTCAGGCAAATTTCAAGAGTCTATCAATTACAATTATGGGATTGTTCTTTGCTTTGACAACTCCAGTAGGGATTGGAATTGGTATAGGGATCAGTAGTGTTTATGATGAGAACAGTCCAACCGCTCTTATTGTTGAAGGAGTCTTCAATGCAGCTTCAGCTGGAATTTTAATCTATATGGCACTTGTTGATCTTCTTGCAGCTGATTTTATGAATCCAAGAATGCAAAAGAGTGGTAGGCTTAGATTAGGATGCAATCTATCTCTTCTACTAGGAGCTGGTTGTATGTCTCTTATAGCCAAATGGGCTTAG 1083 0.3906 MGFKIKMKEFVLSILIFLIIPTLIAAECTCDEEDEDRDKSKALRYKIAALISILVASAIGVSIPLLGKVIPALSPEKDIFFIIKAFAAGVILSTGFIHVLPDAFENLTSPCLKEHPWGDFPFTGFVAMCTAMGTLMVDTYATAYFQNHYNKKAPAQVENHGHGSTSDVEKDANHEGHVNVHTHASHGHSHGPISSNPSSELLRHRVISQVLELGIIVHSVIIGISLGASESPKTIRPLVAALTFHQFFEGMGLGSCITQANFKSLSITIMGLFFALTTPVGIGIGIGISSVYDENSPTALIVEGVFNAASAGILIYMALVDLLAADFMNPRMQKSGRLRLGCNLSLLLGAGCMSLIAKWA 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02408 360 Pfam ZIP Zinc transporter 44 357 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Trre5g02408 360 NCBIfam ZIP zinc/iron transport family 28 360 IPR004698 GO:0005385|GO:0016020|GO:0071577
Trre5g02408 360 PANTHER ZINC/IRON TRANSPORTER 42 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02408 Trre-Chr5 18588653 18591128 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02408 14 360 Inorganic Solute Cotransporters AT3G12750 56.286 4.76e-137 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02408 K14709 - gmx:547695 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02408 5 18588653 18591128 Trre5g02408 5 18588653 18591128 ECH