Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02396 ATGTTGATTGTTGAAACTTTTGTTGTCTTTCTTGAAAAGATTTATGAGCAAAGTGAAGCCAATACCAATAAAAGGTCAAGGTTGAAAAGGAAACTGGCATACATGAATCTCACTGTTGAGAAACAAGACGAGTGGCAGACTATTCTGACCGATGCTGATGAGATGCAAAAATGGTTGTTAAACTCAGATAGTCTTGAGTTCTCGGAACAGATCGGACACAATTCGTATAAAGGATCCTACATGGGGAAAAAGTTGGCATTGAGAAGCTCAGAGGGTGCGACAAAGGGAGCTCTGATGAAATTCATGCAAGGTGGATCTGTTCATGACTTGATTTCAAAGAACAAGAAACTTCAGAACAAGGATATTGTAAGAATTGCCGTTGATGTGGCCGAGGGGATCAAGTTTATGAATGATCATGGTGTTGCGCATAGAGACCTTAATACTCAGAGGATTATGTTGGATAAACATGGGAGTGCTTGCTTGGGAGATTTGGGTATAGTCACTGCGTGCAAGAGCAACCAAGAAGCAATGGATTACGAAACTGATGGTTACCGGTGGCTAGCTCCGGAGGTACGATTCTGA 582 0.4175 MLIVETFVVFLEKIYEQSEANTNKRSRLKRKLAYMNLTVEKQDEWQTILTDADEMQKWLLNSDSLEFSEQIGHNSYKGSYMGKKLALRSSEGATKGALMKFMQGGSVHDLISKNKKLQNKDIVRIAVDVAEGIKFMNDHGVAHRDLNTQRIMLDKHGSACLGDLGIVTACKSNQEAMDYETDGYRWLAPEVRF 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02396 193 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 97 191 - -
Trre5g02396 193 SUPERFAMILY Protein kinase-like (PK-like) 98 191 IPR011009 -
Trre5g02396 193 Pfam Protein tyrosine and serine/threonine kinase 98 191 IPR001245 GO:0004672|GO:0006468
Trre5g02396 193 Gene3D Transferase(Phosphotransferase) domain 1 85 192 - -
Trre5g02396 193 ProSiteProfiles Protein kinase domain profile. 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02396 Trre-Chr5 18510540 18513055 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02396 90 191 MAP Kinase Kinase Kinase AT2G17700 35.238 5.97e-16 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-7 Trre5g02396 PK_Tyr_Ser-Thr 9.4e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02396 - - pvu:PHAVU_008G258400g 224.172