Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02385 ATGAGAATAAAAAGCGTCGTCACCGGTGTCCGCCGCCGTAGTATTACTCCTTCCGTCTCACCTATTCCTAATCTCTCCACCACCGCCCAGGACAACAACCACAATGCAACCGTCTACGACAGCGACACCAGCAACGAAAACCACACACACGCTCCAATTCCCGATTTCGTTCCCGATACCGATATCGAAGATTCTTTAGACGAAAACAGTTGCATTACTTGCAATAAAACCGGTGGAGCATTACTGGTATGTACCCAAACCGATTGCCCTATTACTGTTCACTTCAATTGCATCGGTTCCGAACCTAATTTCGATGATTCTGGAAACTTCTTCTGTCCTTACTGCTCCTACAAACAAGCGTGGAAGAAAACTAGAGAATTAAGAGAAAAAGCTGTTAGAGCGAAGAATGCTCTTTCTAGCTTTTTGGATAAAGGCCAAACAGTGCATAAGGATAAGGAAAATCCCCCTGTCGAACCTGTTAGACCGGAATCGGTTCTGGATCATGTAAACCGGAATGAACATGAACCGGAAGTTTCTGGTTCTGAGAAAGGAAAAAAACAAAATGATAATGATAATGATGAAGATGAAGATAAAGGAAATGTTTCTGAATCGGTGAGTTCGGTTAGTGAAACTAAAGATTCGGATTCATCGTTTTGCATATCAGTGAAGAAAGGCCGTGCCAATGCTAAACCGAAGGTTGCTTCTGTGAAGAAACCTGTGTTGCCGAAACGGAAAGCTGCTGATGCTGATGGTGGTGGTGGTGGTGGTGATGATGGTGGGGAGGAGGAGGAAGTTACGAGTTCTAGAAGTACTATAAGTCGACGAAAGGAAGTTAAGAAGCATTATTTGTTTACTGGAAAGCGTAGGAAATTGTTTTGGACAGCTGAAGAAGAAAAAGCTCTCAAGGAAGGAGTGTTGAAGTTCTCAACAGAAAATCGGAATATTCCTTGGAGGAAAATTTTAGAATTTGGTTGTCGTGTGTTTGATAGCACTCGTACTCCTGTTGATCTCAAGGATAAATGGAGGAACCTCATGAAGGAAGGATGCAAGAAGTAG 1056 0.4299 MRIKSVVTGVRRRSITPSVSPIPNLSTTAQDNNHNATVYDSDTSNENHTHAPIPDFVPDTDIEDSLDENSCITCNKTGGALLVCTQTDCPITVHFNCIGSEPNFDDSGNFFCPYCSYKQAWKKTRELREKAVRAKNALSSFLDKGQTVHKDKENPPVEPVRPESVLDHVNRNEHEPEVSGSEKGKKQNDNDNDEDEDKGNVSESVSSVSETKDSDSSFCISVKKGRANAKPKVASVKKPVLPKRKAADADGGGGGGDDGGEEEEVTSSRSTISRRKEVKKHYLFTGKRRKLFWTAEEEKALKEGVLKFSTENRNIPWRKILEFGCRVFDSTRTPVDLKDKWRNLMKEGCKK 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02385 351 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 30 347 - -
Trre5g02385 351 SMART sant 289 347 IPR001005 -
Trre5g02385 351 SUPERFAMILY Homeodomain-like 292 348 IPR009057 -
Trre5g02385 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 285 349 IPR017930 -
Trre5g02385 351 MobiDBLite consensus disorder prediction 145 193 - -
Trre5g02385 351 ProSitePatterns Zinc finger PHD-type signature. 71 115 IPR019786 -
Trre5g02385 351 ProSiteProfiles Myb-like domain profile. 285 345 IPR001005 -
Trre5g02385 351 SUPERFAMILY FYVE/PHD zinc finger 66 125 IPR011011 -
Trre5g02385 351 CDD PHD_SF 70 115 - -
Trre5g02385 351 SMART PHD_3 70 116 IPR001965 -
Trre5g02385 351 CDD SANT_TRF 293 346 - -
Trre5g02385 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 154 IPR013083 -
Trre5g02385 351 Gene3D - 293 351 - -
Trre5g02385 351 MobiDBLite consensus disorder prediction 143 211 - -
Trre5g02385 351 Pfam Myb-like DNA-binding domain 293 344 IPR001005 -
Trre5g02385 351 MobiDBLite consensus disorder prediction 228 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02385 Trre-Chr5 18331773 18334611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02385 290 344 Single Myb Histone (SMH) Gene Family AT3G49850 52.632 6.63e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre5g02385 Myb_DNA-binding 3.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02385 - - tpra:123911225 451.44