Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02372 ATGGCCAACAACACCAAACCTACTCACTCTATCAACAACAACATCGACCCTAACACTGGTTACTGTTCACAATCTAAAACCTTCCACAGCCTCCGCCCAATCGTCCCTCTCCCACCACCCTCTCAACCACTCTCTCTCACCGATTACGCACTCTCTCTCCTCCCCGAAACCGCCACCTCAAACAACACCTCTGCTCTCATAGACTCCGCCACCGACCACCACCTCACTTACCCCACTTTTCTCCGCCAAATCAAATCCCTCACTTCCTTCCTCCAACAATCCCGCACTCCTCTCTCCAAAGGCCACGTGGCATTAATCCTCACCCCTTCTTCTTTACACGTCCCCGTACTCTATTTCTCTCTCCTCTCCCTTGGTGTCACCATCGCACCTGCTAATCCACTCAGTTCCCAATCCGAGTTAACTCACTTGATTCAACTCACTAAACCCGTCATCGCATTCGCTACTTCCTTAACCGCTTCCAAAATCCCCAACCTCCCATTCGGCACAATCGTAATCGATTCTCCTTCTTTTCTTTCAATACTCGATTCGAACTCCAACTCGAACTCGGAACCTCGACGAGTCGAAATCAGTCAATCAGACACAGCTGCGATTCTCTTCTCTTCAGGAACAACTGGAAAAATTAAAGGCGTGTTGTTAACTCATCGTAACCTTATTGCGTTGATCGGAGGGTTTTGTTACCTGAAACATGCGTATAATGATGGAGTTGTAGATGAACCGCATCCGGTGTCGCTGTTTCCTCTTCCTCTTTTTCATGTGTTTGGATTTTTTATGTTGGTGAGGGCTTTGGCTATGGGGGAGACACTGGTGTTGATGCAGAGGTTTGATTTTGAAGGGATGTTGAAAGCTGTGGAGAAGTATAGGATTACTTATATGCCGGTGTCGCCGCCGTTAGTTACGGCGTTTGCTAAGTCGGAGTTGGTGAAGAAATATGATCTTAGTTCGATTCGGTTGTTGGGGTCCGGTGGCGCGCCACTTGGTAAGGAAGTAGCGGAGAGCTTCAAAACCAAATTCCCCAATGTGGAAATTGTGCAGGGCTATGGTCTAACTGAAAGTGGAGGAGGGGCAGCAAGAATGATAGGGTTTGACGAGGCTAAGCAACATGGTTCTGTGGGTCGACTAGCTGAAAATATGGAGGCCAAGATAGTTGACCCTACTACAGGAGAGGCATTATCTCCTGGCCAGAAAGGGGAGCTTTGGTTGCGAGGACCAACAATCATGAAAGGTTATGTAGGAGACGACAAGGCGACTGTAGAGACATTGGATTCAGAGGGATGGCTGAAGACTGGCGATCTTTGTTATTTTGACTCTGATGGTTTTCTATACATTGTAGATAGACTGAAGGAATTGATCAAATACAAAGCTTATCAGGTTCCCCCAGCTGAATTAGAGCACATACTTCATACAAATCCTGAAATTGCTGATGCTGCAGTAATTCCGTATCCTGATGAAGATGCAGGGCAGATTCCAATGGCTTTTGTGGTAAGAAAGCCTGGAAGCAACATCACTGCCGCTCAGGTCATGGAGTATGTGGCAAAGCAGGTAGCACCATACAAGAAGATACGACGTGTTTCTTTTGTTAACTCTATTCCTAAATCTCCAGCTGGTAAAATTTTAAGAAGAGAATTAGTTGATATTGCTCTAACTAGTGGTTCATCCAAATTGTGA 1686 0.4638 MANNTKPTHSINNNIDPNTGYCSQSKTFHSLRPIVPLPPPSQPLSLTDYALSLLPETATSNNTSALIDSATDHHLTYPTFLRQIKSLTSFLQQSRTPLSKGHVALILTPSSLHVPVLYFSLLSLGVTIAPANPLSSQSELTHLIQLTKPVIAFATSLTASKIPNLPFGTIVIDSPSFLSILDSNSNSNSEPRRVEISQSDTAAILFSSGTTGKIKGVLLTHRNLIALIGGFCYLKHAYNDGVVDEPHPVSLFPLPLFHVFGFFMLVRALAMGETLVLMQRFDFEGMLKAVEKYRITYMPVSPPLVTAFAKSELVKKYDLSSIRLLGSGGAPLGKEVAESFKTKFPNVEIVQGYGLTESGGGAARMIGFDEAKQHGSVGRLAENMEAKIVDPTTGEALSPGQKGELWLRGPTIMKGYVGDDKATVETLDSEGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHILHTNPEIADAAVIPYPDEDAGQIPMAFVVRKPGSNITAAQVMEYVAKQVAPYKKIRRVSFVNSIPKSPAGKILRRELVDIALTSGSSKL 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02372 561 Gene3D - 455 555 IPR045851 -
Trre5g02372 561 ProSitePatterns Putative AMP-binding domain signature. 204 215 IPR020845 -
Trre5g02372 561 Gene3D - 39 454 IPR042099 -
Trre5g02372 561 FunFam 4-coumarate--CoA ligase 2 455 556 - -
Trre5g02372 561 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 551 - -
Trre5g02372 561 Pfam AMP-binding enzyme 60 459 IPR000873 -
Trre5g02372 561 SUPERFAMILY Acetyl-CoA synthetase-like 60 554 - -
Trre5g02372 561 CDD 4CL 63 549 - -
Trre5g02372 561 Pfam AMP-binding enzyme C-terminal domain 468 543 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02372 Trre-Chr5 18183252 18186675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02372 15 561 Monolignol Biosynthesis Gene Families AT5G63380 60.072 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02372 K01904 - gmx:100804044 861.677