Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02367 ATGGCGGCTCTTACCTCTCTCCCTCCTTTTCCCCACACTCTCCTCTTCCTCCGCTCAAAATCAACCAGATTTTCCGTTTCAGCTTCCGCGCTCTCAGCCTCAGGAAATGATGGATCTAATTCTAGAACGTCGCATACAAGAAGGAGAAAAATCGAAGGTCCACGAAAAAGTATGGAAGATTCTGTTCAACGCAAGATGGAGCAATTTTATGAAGGAAATGACGGGCCGCCTTTACGCGTTCTTCCTATTGGTGGTTTAGGTGAAATTGGAATGAATTGTATGCTTGTAGGGAATCATGACCGTTATATTATCATTGATGCTGGTATCATGTTTCCTGACTATGATGACCTTGGAGTACAAAAGATTATACCTGATACAACATTTATAAGAAAATGGAGCCACAAAATTGAAGCGCTTGTTATAACGCATGGTCATGAAGATCATATCGGTGCGTTGCCTTGGGTCATCCCAGCATTGGATCCCAATACACCAATTTTTGCATCTTCCTTTACAATGGAGCTTATAAAAAAACGTTTGAAGGAGCATGGTATTTTTCTTACATCCAGACTCAAAATATTTAGAACAAAGAACAAGTTTGTGGCTGGGCCATTTGAGATAGAACCTATCAGGGTGACTCATTCTATTCCTGACTGTTGTGGATTGGTTCTTCGTTGTTCCGATGGTACCATTCTTCACACTGGGGATTGGAAGATTGACGAGACACCACTTGATGGGAAAGTTTTTGATCGAGAGGCTTTAGAGGAACTCTCTAAAGAAGGAGTAACATTGATGATGAGTGATTCAACAAATGTGCTCTCGCCTGGAAGGACAACAAGTGAATCTGTCGTGGCAGATTCATTATTGAGGCATATTTCAGCTTCTAAAGGAAGGGTTATTACAACTCAGTTTGCATCAAATCTACACAGGATTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTCGTCGGCATGTCTTTAAGGACATACTTAGAAGCAGCTTGGAAGGATGGAAAGGCTCCATTTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGAGGCTTATGCACCTAAGGATCTGCTTATTGTAACAACAGGATCTCAAGCAGAGCCACGTGCTGCCTTAAATCTTGCATCTTATGGAAGTAGCCATGCTTTCAAACTAACCAAGGAAGATATCGTTTTGTATTCTGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGGAAATGATGAATCGCATATCAGAGATTGGATCAACAATAGTTATGGGGAACAATAAATTGTTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAGGAAGTGCTTAGAATAGTGAAGCCGCAACATTTTCTTCCTGTACATGGAGAATACTTGTTCCTTAAGGAGCATGAGTCACTTGGAAAATCAACTGGCATTCATCATACTGCTGTTATTAAGAATGGAGAAATGCTTGGTGTTTCACATTTGAGAAACAGAAAGGTTCTTTCTAATGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTGAAATATAGCGACGGCGACAAAGCATTTGGTACATCCAGTGAACTCTGCATTGATGAAAGATTGAGAATTGCGTTAGATGGCATCATTGTGATTAGCATGGAAATATCTCGCCCTAAAAATTTAGAAAGCTTGGCTGAAAACACCTTAAAAGGGAAGATAAGAATTACCACCAGATGCCTATGGCTCGACAAAGGGAAGCTATTAGATGCACTACATAAAGCTGCTCATGCAGCCCTTTCTAGCTGTTCCGTTAAAAGTCCACTGTCTCATCTGGAAAGAACTGTGTCTGAGGTGTTGAGGAAGATGGTGAGGAAGTACAGTGGTAAACGGCCCGAAGTAATTGCCATTGCCACAGAAAATCCCGGAGCTGTTTTTGCTGATGAGATAAACAAAAAATTGTCTGGCAAATCCCACGTTGGTCCTGGTCTACCAACATTAAGAAAAAAAGTGGATGAACAAAGAAAGGAAAACCAGTCCACCAAACTGCAAACAAGAGATGATGACATTGATATTGAAGGACTATTACCGGAGAAAGATACCACTACAATTCGAGCTGAGGGTGATTTACCTGATTCGGAGGATTCAGTTGAATTTTGGAAACAATTCATTGCATCATCAGTTGAGAAGTCAAACAAAGCTAACAATGGTTATGTTTCACGAAAGGAGTATAAGTCCAATGTGAAGAAAGATGATTCTGAAGACATCGATGAAGCCAAGTCTGAAGAAATGTCTAATGCTGAGCCACAGTCTTCGAAATCAGTAAAGAAAAATAAATGGAAAGCTGAGGAAGTTAAGAAGCTGATTGATTTAAGGAGTGACCTCCGCGACAGATTTAAAGTTGTGAAGGGACGGATGGCTCTCTGGGAAGAGATATCTCAGAGCTTGTTGGCTGATGGGATCAGCAGAAGTCCCGGACAATGCAAATCTCTATGGACATCCTTGGTACAGAAATATGAGGACATTAAGAATGGGAAGGATACCAGAAAAAATTGGCAATATCTTGAGGACATGGAAAGGATATTGTCCGGTGATGAAGAACCCGCAACAAATTGA 2604 0.4109 MAALTSLPPFPHTLLFLRSKSTRFSVSASALSASGNDGSNSRTSHTRRRKIEGPRKSMEDSVQRKMEQFYEGNDGPPLRVLPIGGLGEIGMNCMLVGNHDRYIIIDAGIMFPDYDDLGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDPNTPIFASSFTMELIKKRLKEHGIFLTSRLKIFRTKNKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADSLLRHISASKGRVITTQFASNLHRIGSVKAAADLTGRKLVFVGMSLRTYLEAAWKDGKAPFDPSTLVKAEDIEAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDIVLYSAKVIPGNESRVMEMMNRISEIGSTIVMGNNKLLHTSGHAYRGELEEVLRIVKPQHFLPVHGEYLFLKEHESLGKSTGIHHTAVIKNGEMLGVSHLRNRKVLSNGFISLGKENLQLKYSDGDKAFGTSSELCIDERLRIALDGIIVISMEISRPKNLESLAENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCSVKSPLSHLERTVSEVLRKMVRKYSGKRPEVIAIATENPGAVFADEINKKLSGKSHVGPGLPTLRKKVDEQRKENQSTKLQTRDDDIDIEGLLPEKDTTTIRAEGDLPDSEDSVEFWKQFIASSVEKSNKANNGYVSRKEYKSNVKKDDSEDIDEAKSEEMSNAEPQSSKSVKKNKWKAEEVKKLIDLRSDLRDRFKVVKGRMALWEEISQSLLADGISRSPGQCKSLWTSLVQKYEDIKNGKDTRKNWQYLEDMERILSGDEEPATN 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02367 867 Pfam Beta-lactamase superfamily domain 103 237 IPR001279 -
Trre5g02367 867 MobiDBLite consensus disorder prediction 741 760 - -
Trre5g02367 867 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 431 481 IPR011108 -
Trre5g02367 867 CDD RNaseJ_MBL-fold 81 492 - -
Trre5g02367 867 Gene3D - 279 429 IPR042173 -
Trre5g02367 867 Gene3D - 530 636 - -
Trre5g02367 867 SMART Lactamase_B_5a 90 287 IPR001279 -
Trre5g02367 867 MobiDBLite consensus disorder prediction 30 61 - -
Trre5g02367 867 SUPERFAMILY Metallo-hydrolase/oxidoreductase 78 492 IPR036866 -
Trre5g02367 867 PANTHER RIBONUCLEASE J 1 866 - -
Trre5g02367 867 MobiDBLite consensus disorder prediction 662 707 - -
Trre5g02367 867 ProSiteProfiles Myb-like domain profile. 768 832 IPR001005 -
Trre5g02367 867 Pfam Myb/SANT-like DNA-binding domain 774 857 IPR044822 -
Trre5g02367 867 MobiDBLite consensus disorder prediction 42 61 - -
Trre5g02367 867 CDD GT1 774 839 - -
Trre5g02367 867 MobiDBLite consensus disorder prediction 741 773 - -
Trre5g02367 867 Gene3D - 82 494 IPR036866 -
Trre5g02367 867 SMART sant 772 834 IPR001005 -
Trre5g02367 867 Gene3D - 776 836 - -
Trre5g02367 867 MobiDBLite consensus disorder prediction 652 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02367 Trre-Chr5 18109701 18118494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02367 775 859 Trihelix Transcription Factor Family AT2G38250 32.184 7.25e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre5g02367 Lactamase_B_2 2.5e-09 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02367 - - gmx:100783850 1381.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02367 5 18109701 18118494 Trre5g02367 5 18109701 18118494 ECH