Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02363 ATGGTTTCAACGAGACGCAACAGTGGTGGATCTTTCCCTTCTTCTAACAATAACAACAACAATAACTCTAAAAGACCTTCGTCATCTTCCGATGACAAACCTCCTTCTTCTCCTTCTCCTAAGCGTCAAAAGTCTGACAATGGTGCTACTGCTGCTGCTGCTGCTGAGAAACCGATTTCTCCGGCGGAGAATTCCAAGGATTTGTCTACTCCTGACCCTCCCGCCGATCCCGGAGAATGTCGTAACGCTGATGCTCAGATCGATGAACCGGCAGTAGCTGCTGATGATAAAACCGATGCTACTCCGCCGATCGCTGACGGTTCTTCGCCGACTCTGGTAGCCGATAAACCTAGGGCTTCGTTTTCTTCATGGAGTATATATCAGAAGCAAAACCCGAACCTTGAGTCTTCAGCTCCATGGTGTCGGCTTCTGTCTCAGTCTGCACAGCATCCAAATGTTTCAATTTGCACACCCAATTTTACTATTGGCTCTAGCAGAAATTGCAACTTTCATTTGAAGGATCATACTATAAGTGGAAATTTATGCAAGATCAAACATACACAGCGCGAGGGACTTGATGCGGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTTAATGGGACACTTGTCAAGAAGAATAACTGCTGCACGCTTCTCTCGGGCGATGAGGTGGTTTTTGGCTTGCATGGAAATCATTCTTATATTTTTCAGCAAGTAAACACCGAGGTTGCGGTTAAGGGTGTAGAAGTTCAGAGTGGTGTTGGTAAATTTATGCAACTTGAAAGGAGAAGTGGAGACCCTTCAGCCGTGGCTGGGGCTTCTATCTTAGCTTCTCTTTCTAATCTCAGGCAGGATCTTACAAGATGGAAGTCTCCATCTCAGACTGCCAGTAAGCCTCACCAGGCTGCTGATGTTTCTATTCATACTGTTCTACCTGATGGCACAGAAATTGAGCTTGATGGCCTGGAAGGAAACTCAACTCCAAATATTGGAACTGATAAAGCTGCTGACGCGGAGGCTAGCAACAAGAACTCTCCTATGGAATGCGATCCAGAGGATGCGGGCGCAGAGCCAGGCAATGTATTGGAAGAAAGAAATGGGGAGGAGGACACACAAGCTGCATCGACTTCGGGTACATCTGTACGCTGTGCAGTTTTTAAAGAAGATGCTCATGCTGCAATACTGGATGAAAAAGAACTAGAAGTGTCCTTTGACAACTTCCCATACTATTTAAGTGAGAATACAAAAAATGTCCTGATTGCAGCTTGCTTTATACACCTGAAGCATAAAGAACATGCAAAGTACACCACAGATCTTACCACCGTAAATCCTCGTATTCTACTTTCAGGACCCGCAGGGTCAGAAATATATCAGGAGATGCTTGTAAAAGCACTTGCAAAATACTTTGGTGCTAAATTGCTCATATTTGATAGCCAGTCGCTCTTGGGTGGTTTATCTTCTAAGGAAGCTGAACTGCTCAAAGATGGATTTAATGCTGAGAAATCTTGCAGTCCTACAGCCACAGACACGACTAAGAGCATGGATCCACCAGCTAGTGAAACGGATACACCTAGCACTTCAAATGCACCTACTCCACTTGGCCTTGAACCTCAAACTAAGTTGGAAAATGATAGTGTACCGTCAACGTCTGGGACATCTAAAAATTGCTTGTTTAAACTGGGCGACCGGGTTAAGTATAGTTCATCTTCTGGTTGTTTGTATCAGACATCTTCTTCAAGGGGTCCATCTAATGGAAGTCGAGGGAAGGTTGTCTTAATTTTCGATGATAATCCATTGTCAAAAATTGGTGTAAGATTTGATAAACCTATACCTGATGGGGTTGATCTTGGAGGTGCCTGTGAGGGGGGTCAGGGATTTTTCTGCAACGTCACTGATCTTCGATTGGAAAACAGTGGCATTGACGAACTCGACAAATTACTTATTAATACGTTGTTTGAGGTTGTAACTAGTGAGAGTAGAAATTCACCTTTCATTTTGTTCATGAAAGAAGCAGAAAAGGCTATAGTAGGAAATGGAGATCCATATTCATTTAAAATGAAGCTTGAAATGCTTCCTGACAATGTGGTGGTAATAGGTTCACACACTAACACCGACAGTCGAAAGGAGAAGTCACATCCCGGGGGTTTGCTTTTTACAAAATTTGGCAGCAATCAGACTGCCCTCCTTGACTTGGCTTTCCCGGATAGTTTCGGAAGATTGCATGATAGGGGAAAAGAAGTCCCAAAACCAAACAAAACTTTGACCAAGTTATTTCCAAATAAAGTAACAATTCACATGCCACAGGATGAGGCACTTCTAGCATCATGGAAACAACAACTTGATCGAGATGTGGAGACTCTTAAAGTCAAAGGAAATTTGCACCATTTGCGCACCGTTTTAAGCCGTAGTGGGATGGAATGTGAAGGACTCGAGGGCTTGTGTGTCAAGGATCTGACACTTACAAATGAAAATTCAGAGAAGATTGTTGGTTGGGCTTTAAGCCACCATCTGATGCAGAATTCTGAAGTTGACGCTGATGCAAAGCTTGTGTTGTCTTGTGAGAGCCTCCAGTATGGAATTGGGATCTTACAAGCTATCCAGAATGAGTCGAAGAGCCTAAAAAAGTCTCTTAAGGATGTTGTAACAGAAAACGAGTTTGAAAAGAGGCTTTTGGGCGATGTTATTCCACCTAGCGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTTAAGGATACATTGAAGGAATTGGTGATGCTTCCTTTACAGAGGCCAGAGCTTTTTTGCAAGGGGCAGTTAACCAAGCCATGCAAGGGCATTCTTTTATTTGGTCCACCGGGAACAGGCAAGACAATGCTTGCCAAGGCAGTTGCCACCGACGCTGGTGCAAACTTCATCAATATTTCCATGTCAAGCATCACATCTAAGTGGTTTGGTGAGGGTGAAAAATATGTCAAAGCTGTTTTCTCCCTGGCAAGTAAAATTGCTCCCAGTGTGATATTTGTTGATGAAGTTGATAGTATGTTGGGCCGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAACTGGGATGGCTTACGTACAAAGGATACTGAACGTGTTCTTGTGCTCGCAGCCACCAATAGACCTTATGACCTTGATGAGGCTGTCATACGAAGGCTGCCTCGGAGATTAATGGTAAATTTACCAGATGCTCCAAATAGAGCAAAAATATTGAAAGTTATACTGGCAAAAGAGGACCTGTCTTCTGATGTTGATCTGAGTGCAGTTGCAAGTATGACTGACGGATATTCTGGAAGTGATCTTAAGAACTTATGTGTAACCGCTGCACACCGTCCTATTAAAGAGATACTAGAAAAGGAAAAAAAGGAACTTGCTGCTGCTCTAGCAGAAGGTAGACCTGCACCTGCATTACGTGGAAGTGATGATATCCGATCTTTAAACATGGAAGACTTTAAACATGCTCACCAACAGGTATGTGCAAGTGTTTCCTCTGAATCCGTAAATATGACAGAGCTTGTACAATGGAATGAACTCTATGGTGAAGGTGGTTCAAGAGTTAAGAAAGCACTAAGCTATTTCATGTGA 3633 0.4335 MVSTRRNSGGSFPSSNNNNNNNSKRPSSSSDDKPPSSPSPKRQKSDNGATAAAAAEKPISPAENSKDLSTPDPPADPGECRNADAQIDEPAVAADDKTDATPPIADGSSPTLVADKPRASFSSWSIYQKQNPNLESSAPWCRLLSQSAQHPNVSICTPNFTIGSSRNCNFHLKDHTISGNLCKIKHTQREGLDAAVLESTGSKGSVLVNGTLVKKNNCCTLLSGDEVVFGLHGNHSYIFQQVNTEVAVKGVEVQSGVGKFMQLERRSGDPSAVAGASILASLSNLRQDLTRWKSPSQTASKPHQAADVSIHTVLPDGTEIELDGLEGNSTPNIGTDKAADAEASNKNSPMECDPEDAGAEPGNVLEERNGEEDTQAASTSGTSVRCAVFKEDAHAAILDEKELEVSFDNFPYYLSENTKNVLIAACFIHLKHKEHAKYTTDLTTVNPRILLSGPAGSEIYQEMLVKALAKYFGAKLLIFDSQSLLGGLSSKEAELLKDGFNAEKSCSPTATDTTKSMDPPASETDTPSTSNAPTPLGLEPQTKLENDSVPSTSGTSKNCLFKLGDRVKYSSSSGCLYQTSSSRGPSNGSRGKVVLIFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLENSGIDELDKLLINTLFEVVTSESRNSPFILFMKEAEKAIVGNGDPYSFKMKLEMLPDNVVVIGSHTNTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVTIHMPQDEALLASWKQQLDRDVETLKVKGNLHHLRTVLSRSGMECEGLEGLCVKDLTLTNENSEKIVGWALSHHLMQNSEVDADAKLVLSCESLQYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLGDVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATDAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPYDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSSDVDLSAVASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKELAAALAEGRPAPALRGSDDIRSLNMEDFKHAHQQVCASVSSESVNMTELVQWNELYGEGGSRVKKALSYFM 1210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02363 1210 Pfam FHA domain 161 230 IPR000253 GO:0005515
Trre5g02363 1210 MobiDBLite consensus disorder prediction 505 554 - -
Trre5g02363 1210 MobiDBLite consensus disorder prediction 1 116 - -
Trre5g02363 1210 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 389 1209 - -
Trre5g02363 1210 ProSitePatterns AAA-protein family signature. 1049 1068 IPR003960 GO:0005524|GO:0016887
Trre5g02363 1210 Gene3D - 1078 1172 - -
Trre5g02363 1210 Pfam ATPase family associated with various cellular activities (AAA) 946 1075 IPR003959 GO:0005524|GO:0016887
Trre5g02363 1210 Gene3D - 139 248 - -
Trre5g02363 1210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 905 1185 IPR027417 -
Trre5g02363 1210 Gene3D - 904 1185 IPR027417 -
Trre5g02363 1210 CDD RecA-like_ATAD1 909 1075 - -
Trre5g02363 1210 MobiDBLite consensus disorder prediction 1 46 - -
Trre5g02363 1210 Pfam AAA+ lid domain 1099 1134 IPR041569 -
Trre5g02363 1210 MobiDBLite consensus disorder prediction 505 537 - -
Trre5g02363 1210 SMART AAA_5 942 1079 IPR003593 GO:0016887
Trre5g02363 1210 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 904 1080 - -
Trre5g02363 1210 SUPERFAMILY SMAD/FHA domain 120 240 IPR008984 GO:0005515
Trre5g02363 1210 Coils Coil 866 886 - -
Trre5g02363 1210 MobiDBLite consensus disorder prediction 324 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02363 Trre-Chr5 18080344 18092355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02363 905 1153 Calmodulin-binding Proteins AT3G56690 40.625 1.06e-42 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02363 - - tpra:123897002 2187.92