Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02362 ATGGTTTCAACGAGACGCAACAGTGGTGGATCTTTCCCTTCTTCTAACAATAACAACAACAATAACTCTAAAAGACCTTCGTCATCTTCCGATGACAAACCTCCTTCTTCTCCTTCTCCTAAGCGTCAAAAGTCTGACAATGGTGCTACTGCTGCTGCTGCTGCTGAGAAACCGATTTCTCCGGCGGAGAATTCCAAGGATTTGTCTACTCCTGACCCTCCCGCCGATCCCGGAGAATGTCGTAACGCTGATGCTCAGATCGATGAACCGGCAGTAGCTGCTGATGATAAAACCGATGCTACTCCGCCGATCGCTGACGGTTCTTCGCCGACTCTGGTAGCCGATAAACCTAGGGCTTCGTTTTCTTCATGGAGTATATATCAGAAGCAAAACCCGAACCTTGAGTCTTCAGCTCCATGGTGTCGGCTTCTGTCTCAGTCTGCACAGCATCCAAATGTTTCAATTTGCACACCCAATTTTACTATTGGCTCTAGCAGAAATTGCAACTTTCATTTGAAGGATCATACTATAAGTGGAAATTTATGCAAGATCAAACATACACAGCGCGAGGGACTTGATGCGGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTTAATGGGACACTTGTCAAGAAGAATAACTGCTGCACGCTTCTCTCGGGCGATGAGGTGGTTTTTGGCTTGCATGGAAATCATTCTTATATTTTTCAGCAAGTAAACACCGAGGTTGCGGTTAAGGGTGTAGAAGTTCAGAGTGGTGTTGGTAAATTTATGCAACTTGAAAGGAGAAGTGGAGACCCTTCAGCCGTGGCTGGGGCTTCTATCTTAGCTTCTCTTTCTAATCTCAGGCAGGATCTTACAAGATGGAAGTCTCCATCTCAGACTGCCAGTAAGCCTCACCAGGCTGCTGATGTTTCTATTCATACTGTTCTACCTGATGGCACAGAAATTGAGCTTGATGGCCTGGAAGGAAACTCAACTCCAAATATTGGAACTGATAAAGCTGCTGACGCGGAGGCTAGCAACAAGAACTCTCCTATGGAATGCGATCCAGAGGATGCGGGCGCAGAGCCAGGCAATGTAAAATTCTCTGGGGTATTGGAAGAAAGAAATGGGGAGGAGGACACACAAGCTGCATCGACTTCGGGTACATCTGTACGCTGTGCAGTTTTTAAAGAAGATGCTCATGCTGCAATACTGGATGAAAAAGAACTAGAAGTGTCCTTTGACAACTTCCCATACTATTTAAGTGAGAATACAAAAAATGTCCTGATTGCAGCTTGCTTTATACACCTGAAGCATAAAGAACATGCAAAGTACACCACAGATCTTACCACCGTAAATCCTCGTATTCTACTTTCAGGACCCGCAGGGTCAGAAATATATCAGGAGATGCTTGTAAAAGCACTTGCAAAATACTTTGGTGCTAAATTGCTCATATTTGATAGCCAGTCGCTCTTGGGTGGTTTATCTTCTAAGGAAGCTGAACTGCTCAAAGATGGATTTAATGCTGAGAAATCTTGCAGTCCTACAGCCACAGACACGACTAAGAGCATGGATCCACCAGCTAGTGAAACGGATACACCTAGCACTTCAAATGCACCTACTCCACTTGGCCTTGAACCTCAAACTAAGTTGGAAAATGATAGTGTACCGTCAACGTCTGGGACATCTAAAAATTGCTTGTTTAAACTGGGCGACCGGGTTAAGTATAGTTCATCTTCTGGTTGTTTGTATCAGACATCTTCTTCAAGGGGTCCATCTAATGGAAGTCGAGGGAAGGTTGTCTTAATTTTCGATGATAATCCATTGTCAAAAATTGGTGTAAGATTTGATAAACCTATACCTGATGGGGTTGATCTTGGAGGTGCCTGTGAGGGGGGTCAGGGATTTTTCTGCAACGTCACTGATCTTCGATTGGAAAACAGTGGCATTGACGAACTCGACAAATTACTTATTAATACGTTGTTTGAGGTTGTAACTAGTGAGAGTAGAAATTCACCTTTCATTTTGTTCATGAAAGAAGCAGAAAAGGCTATAGTAGGAAATGGAGATCCATATTCATTTAAAATGAAGCTTGAAATGCTTCCTGACAATGTGGTGGTAATAGGTTCACACACTAACACCGACAGTCGAAAGGAGAAGTCACATCCCGGGGGTTTGCTTTTTACAAAATTTGGCAGCAATCAGACTGCCCTCCTTGACTTGGCTTTCCCGGATAGTTTCGGAAGATTGCATGATAGGGGAAAAGAAGTCCCAAAACCAAACAAAACTTTGACCAAGTTATTTCCAAATAAAGTAACAATTCACATGCCACAGGATGAGGCACTTCTAGCATCATGGAAACAACAACTTGATCGAGATGTGGAGACTCTTAAAGTCAAAGGAAATTTGCACCATTTGCGCACCGTTTTAAGCCGTAGTGGGATGGAATGTGAAGGACTCGAGGGCTTGTGTGTCAAGGATCTGACACTTACAAATGAAAATTCAGAGAAGATTGTTGGTTGGGCTTTAAGCCACCATCTGATGCAGAATTCTGAAGTTGACGCTGATGCAAAGCTTGTGTTGTCTTGTGAGAGCCTCCAGTATGGAATTGGGATCTTACAAGCTATCCAGAATGAGTCGAAGAGCCTAAAAAAGTCTCTTAAGGATGTTGTAACAGAAAACGAGTTTGAAAAGAGGCTTTTGGGCGATGTTATTCCACCTAGCGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTTAAGGATACATTGAAGGAATTGGTGATGCTTCCTTTACAGAGGCCAGAGCTTTTTTGCAAGGGGCAGTTAACCAAGCCATGCAAGGGCATTCTTTTATTTGGTCCACCGGGAACAGGCAAGACAATGCTTGCCAAGGCAGTTGCCACCGACGCTGGTGCAAACTTCATCAATATTTCCATGTCAAGCATCACATCTAAGTGGTTTGGTGAGGGTGAAAAATATGTCAAAGCTGTTTTCTCCCTGGCAAGTAAAATTGCTCCCAGTGTGATATTTGTTGATGAAGTTGATAGTATGTTGGGCCGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAACTGGGATGGCTTACGTACAAAGGATACTGAACGTGTTCTTGTGCTCGCAGCCACCAATAGACCTTATGACCTTGATGAGGCTGTCATACGAAGGCTGCCTCGGAGATTAATGGTAAATTTACCAGATGCTCCAAATAGAGCAAAAATATTGAAAGTTATACTGGCAAAAGAGGACCTGTCTTCTGATGTTGATCTGAGTGCAGTTGCAAGTATGACTGACGGATATTCTGGAAGTGATCTTAAGAACTTATGTGTAACCGCTGCACACCGTCCTATTAAAGAGATACTAGAAAAGGAAAAAAAGGAACTTGCTGCTGCTCTAGCAGAAGGTAGACCTGCACCTGCATTACGTGGAAGTGATGATATCCGATCTTTAAACATGGAAGACTTTAAACATGCTCACCAACAGGTATGTGCAAGTGTTTCCTCTGAATCCGTAAATATGACAGAGCTTGTACAATGGAATGAACTCTATGGTGAAGGTGGTTCAAGAGTTAAGAAAGCACTAAGCTATTTCATGTGA 3648 0.4334 MVSTRRNSGGSFPSSNNNNNNNSKRPSSSSDDKPPSSPSPKRQKSDNGATAAAAAEKPISPAENSKDLSTPDPPADPGECRNADAQIDEPAVAADDKTDATPPIADGSSPTLVADKPRASFSSWSIYQKQNPNLESSAPWCRLLSQSAQHPNVSICTPNFTIGSSRNCNFHLKDHTISGNLCKIKHTQREGLDAAVLESTGSKGSVLVNGTLVKKNNCCTLLSGDEVVFGLHGNHSYIFQQVNTEVAVKGVEVQSGVGKFMQLERRSGDPSAVAGASILASLSNLRQDLTRWKSPSQTASKPHQAADVSIHTVLPDGTEIELDGLEGNSTPNIGTDKAADAEASNKNSPMECDPEDAGAEPGNVKFSGVLEERNGEEDTQAASTSGTSVRCAVFKEDAHAAILDEKELEVSFDNFPYYLSENTKNVLIAACFIHLKHKEHAKYTTDLTTVNPRILLSGPAGSEIYQEMLVKALAKYFGAKLLIFDSQSLLGGLSSKEAELLKDGFNAEKSCSPTATDTTKSMDPPASETDTPSTSNAPTPLGLEPQTKLENDSVPSTSGTSKNCLFKLGDRVKYSSSSGCLYQTSSSRGPSNGSRGKVVLIFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLENSGIDELDKLLINTLFEVVTSESRNSPFILFMKEAEKAIVGNGDPYSFKMKLEMLPDNVVVIGSHTNTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVTIHMPQDEALLASWKQQLDRDVETLKVKGNLHHLRTVLSRSGMECEGLEGLCVKDLTLTNENSEKIVGWALSHHLMQNSEVDADAKLVLSCESLQYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLGDVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATDAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPYDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSSDVDLSAVASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKELAAALAEGRPAPALRGSDDIRSLNMEDFKHAHQQVCASVSSESVNMTELVQWNELYGEGGSRVKKALSYFM 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02362 1215 CDD RecA-like_ATAD1 914 1080 - -
Trre5g02362 1215 MobiDBLite consensus disorder prediction 1 116 - -
Trre5g02362 1215 MobiDBLite consensus disorder prediction 321 363 - -
Trre5g02362 1215 MobiDBLite consensus disorder prediction 510 542 - -
Trre5g02362 1215 Pfam ATPase family associated with various cellular activities (AAA) 951 1080 IPR003959 GO:0005524|GO:0016887
Trre5g02362 1215 ProSitePatterns AAA-protein family signature. 1054 1073 IPR003960 GO:0005524|GO:0016887
Trre5g02362 1215 MobiDBLite consensus disorder prediction 1 46 - -
Trre5g02362 1215 Gene3D - 1083 1177 - -
Trre5g02362 1215 SMART AAA_5 947 1084 IPR003593 GO:0016887
Trre5g02362 1215 Pfam AAA+ lid domain 1104 1139 IPR041569 -
Trre5g02362 1215 Coils Coil 871 891 - -
Trre5g02362 1215 Gene3D - 909 1190 IPR027417 -
Trre5g02362 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 910 1190 IPR027417 -
Trre5g02362 1215 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 909 1085 - -
Trre5g02362 1215 Pfam FHA domain 161 230 IPR000253 GO:0005515
Trre5g02362 1215 SUPERFAMILY SMAD/FHA domain 120 240 IPR008984 GO:0005515
Trre5g02362 1215 Gene3D - 139 248 - -
Trre5g02362 1215 MobiDBLite consensus disorder prediction 510 559 - -
Trre5g02362 1215 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 394 1214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02362 Trre-Chr5 18080344 18092355 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02362 910 1158 Calmodulin-binding Proteins AT3G56690 40.625 1.25e-42 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02362 - - tpra:123897002 2199.48