Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre5g02361 | ATGGTTTCAACGAGACGCAACAGTGGTGGATCTTTCCCTTCTTCTAACAATAACAACAACAATAACTCTAAAAGACCTTCGTCATCTTCCGATGACAAACCTCCTTCTTCTCCTTCTCCTAAGCGTCAAAAGTCTGACAATGGTGCTACTGCTGCTGCTGCTGCTGAGAAACCGATTTCTCCGGCGGAGAATTCCAAGGATTTGTCTACTCCTGACCCTCCCGCCGATCCCGGAGAATGTCGTAACGCTGATGCTCAGATCGATGAACCGGCAGTAGCTGCTGATGATAAAACCGATGCTACTCCGCCGATCGCTGACGGTTCTTCGCCGACTCTGGTAGCCGATAAACCTAGGGCTTCGTTTTCTTCATGGAGTATATATCAGAAGCAAAACCCGAACCTTGAGTCTTCAGCTCCATGGTGTCGGCTTCTGTCTCAGTCTGCACAGCATCCAAATGTTTCAATTTGCACACCCAATTTTACTATTGGCTCTAGCAGAAATTGCAACTTTCATTTGAAGGATCATACTATAAGTGGAAATTTATGCAAGATCAAACATACACAGCGCGAGGGACTTGATGCGGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTTAATGGGACACTTGTCAAGAAGAATAACTGCTGCACGCTTCTCTCGGGCGATGAGGTGGTTTTTGGCTTGCATGGAAATCATTCTTATATTTTTCAGCAAGTAAACACCGAGGTTGCGGTTAAGGGTGTAGAAGTTCAGAGTGGTGTTGGTAAATTTATGCAACTTGAAAGGAGAAGTGGAGACCCTTCAGCCGTGGCTGGGGCTTCTATCTTAGCTTCTCTTTCTAATCTCAGGCAGGATCTTACAAGATGGAAGTCTCCATCTCAGACTGCCAGTAAGCCTCACCAGGCTGCTGATGTTTCTATTCATACTGTTCTACCTGATGGCACAGAAATTGAGCTTGATGGCCTGGAAGGAAACTCAACTCCAAATATTGGAACTGATAAAGCTGCTGACGCGGAGGCTAGCAACAAGAACTCTCCTATGGAATGCGATCCAGAGGATGCGGGCGCAGAGCCAGGCAATGTAAAATTCTCTGGGGTGAATGATTTGCTAAGGCCTTTCTTCAGGATTCTAGCTGGATCTACTACTTGTAAACTGAAATTGAGCCAAAGTATCTGTAAACAGGTATTGGAAGAAAGAAATGGGGAGGAGGACACACAAGCTGCATCGACTTCGGGTACATCTGTACGCTGTGCAGTTTTTAAAGAAGATGCTCATGCTGCAATACTGGATGAAAAAGAACTAGAAGTGTCCTTTGACAACTTCCCATACTATTTAAGTGAGAATACAAAAAATGTCCTGATTGCAGCTTGCTTTATACACCTGAAGCATAAAGAACATGCAAAGTACACCACAGATCTTACCACCGTAAATCCTCGTATTCTACTTTCAGGACCCGCAGGGTCAGAAATATATCAGGAGATGCTTGTAAAAGCACTTGCAAAATACTTTGGTGCTAAATTGCTCATATTTGATAGCCAGTCGCTCTTGGGTGGTTTATCTTCTAAGGAAGCTGAACTGCTCAAAGATGGATTTAATGCTGAGAAATCTTGCAGTCCTACAGCCACAGACACGACTAAGAGCATGGATCCACCAGCTAGTGAAACGGATACACCTAGCACTTCAAATGCACCTACTCCACTTGGCCTTGAACCTCAAACTAAGTTGGAAAATGATAGTGTACCGTCAACGTCTGGGACATCTAAAAATTGCTTGTTTAAACTGGGCGACCGGGTTAAGTATAGTTCATCTTCTGGTTGTTTGTATCAGACATCTTCTTCAAGGGGTCCATCTAATGGAAGTCGAGGGAAGGTTGTCTTAATTTTCGATGATAATCCATTGTCAAAAATTGGTGTAAGATTTGATAAACCTATACCTGATGGGGTTGATCTTGGAGGTGCCTGTGAGGGGGGTCAGGGATTTTTCTGCAACGTCACTGATCTTCGATTGGAAAACAGTGGCATTGACGAACTCGACAAATTACTTATTAATACGTTGTTTGAGGTTGTAACTAGTGAGAGTAGAAATTCACCTTTCATTTTGTTCATGAAAGAAGCAGAAAAGGCTATAGTAGGAAATGGAGATCCATATTCATTTAAAATGAAGCTTGAAATGCTTCCTGACAATGTGGTGGTAATAGGTTCACACACTAACACCGACAGTCGAAAGGAGAAGTCACATCCCGGGGGTTTGCTTTTTACAAAATTTGGCAGCAATCAGACTGCCCTCCTTGACTTGGCTTTCCCGGATAGTTTCGGAAGATTGCATGATAGGGGAAAAGAAGTCCCAAAACCAAACAAAACTTTGACCAAGTTATTTCCAAATAAAGTAACAATTCACATGCCACAGGATGAGGCACTTCTAGCATCATGGAAACAACAACTTGATCGAGATGTGGAGACTCTTAAAGTCAAAGGAAATTTGCACCATTTGCGCACCGTTTTAAGCCGTAGTGGGATGGAATGTGAAGGACTCGAGGGCTTGTGTGTCAAGGATCTGACACTTACAAATGAAAATTCAGAGAAGATTGTTGGTTGGGCTTTAAGCCACCATCTGATGCAGAATTCTGAAGTTGACGCTGATGCAAAGCTTGTGTTGTCTTGTGAGAGCCTCCAGTATGGAATTGGGATCTTACAAGCTATCCAGAATGAGTCGAAGAGCCTAAAAAAGTCTCTTAAGGATGTTGTAACAGAAAACGAGTTTGAAAAGAGGCTTTTGGGCGATGTTATTCCACCTAGCGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTTAAGGATACATTGAAGGAATTGGTGATGCTTCCTTTACAGAGGCCAGAGCTTTTTTGCAAGGGGCAGTTAACCAAGCCATGCAAGGGCATTCTTTTATTTGGTCCACCGGGAACAGGCAAGACAATGCTTGCCAAGGCAGTTGCCACCGACGCTGGTGCAAACTTCATCAATATTTCCATGTCAAGCATCACATCTAAGTGGTTTGGTGAGGGTGAAAAATATGTCAAAGCTGTTTTCTCCCTGGCAAGTAAAATTGCTCCCAGTGTGATATTTGTTGATGAAGTTGATAGTATGTTGGGCCGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAACTGGGATGGCTTACGTACAAAGGATACTGAACGTGTTCTTGTGCTCGCAGCCACCAATAGACCTTATGACCTTGATGAGGCTGTCATACGAAGGCTGCCTCGGAGATTAATGGTAAATTTACCAGATGCTCCAAATAGAGCAAAAATATTGAAAGTTATACTGGCAAAAGAGGACCTGTCTTCTGATGTTGATCTGAGTGCAGTTGCAAGTATGACTGACGGATATTCTGGAAGTGATCTTAAGAACTTATGTGTAACCGCTGCACACCGTCCTATTAAAGAGATACTAGAAAAGGAAAAAAAGGAACTTGCTGCTGCTCTAGCAGAAGGTAGACCTGCACCTGCATTACGTGGAAGTGATGATATCCGATCTTTAAACATGGAAGACTTTAAACATGCTCACCAACAGGTATGTGCAAGTGTTTCCTCTGAATCCGTAAATATGACAGAGCTTGTACAATGGAATGAACTCTATGGTGAAGGTGGTTCAAGAGTTAAGAAAGCACTAAGCTATTTCATGTGA | 3735 | 0.4321 | MVSTRRNSGGSFPSSNNNNNNNSKRPSSSSDDKPPSSPSPKRQKSDNGATAAAAAEKPISPAENSKDLSTPDPPADPGECRNADAQIDEPAVAADDKTDATPPIADGSSPTLVADKPRASFSSWSIYQKQNPNLESSAPWCRLLSQSAQHPNVSICTPNFTIGSSRNCNFHLKDHTISGNLCKIKHTQREGLDAAVLESTGSKGSVLVNGTLVKKNNCCTLLSGDEVVFGLHGNHSYIFQQVNTEVAVKGVEVQSGVGKFMQLERRSGDPSAVAGASILASLSNLRQDLTRWKSPSQTASKPHQAADVSIHTVLPDGTEIELDGLEGNSTPNIGTDKAADAEASNKNSPMECDPEDAGAEPGNVKFSGVNDLLRPFFRILAGSTTCKLKLSQSICKQVLEERNGEEDTQAASTSGTSVRCAVFKEDAHAAILDEKELEVSFDNFPYYLSENTKNVLIAACFIHLKHKEHAKYTTDLTTVNPRILLSGPAGSEIYQEMLVKALAKYFGAKLLIFDSQSLLGGLSSKEAELLKDGFNAEKSCSPTATDTTKSMDPPASETDTPSTSNAPTPLGLEPQTKLENDSVPSTSGTSKNCLFKLGDRVKYSSSSGCLYQTSSSRGPSNGSRGKVVLIFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLENSGIDELDKLLINTLFEVVTSESRNSPFILFMKEAEKAIVGNGDPYSFKMKLEMLPDNVVVIGSHTNTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVTIHMPQDEALLASWKQQLDRDVETLKVKGNLHHLRTVLSRSGMECEGLEGLCVKDLTLTNENSEKIVGWALSHHLMQNSEVDADAKLVLSCESLQYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLGDVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATDAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPYDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSSDVDLSAVASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKELAAALAEGRPAPALRGSDDIRSLNMEDFKHAHQQVCASVSSESVNMTELVQWNELYGEGGSRVKKALSYFM | 1244 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre5g02361 | 1244 | Pfam | AAA+ lid domain | 1133 | 1168 | IPR041569 | - | |
Trre5g02361 | 1244 | SUPERFAMILY | SMAD/FHA domain | 120 | 240 | IPR008984 | GO:0005515 | |
Trre5g02361 | 1244 | MobiDBLite | consensus disorder prediction | 1 | 116 | - | - | |
Trre5g02361 | 1244 | ProSitePatterns | AAA-protein family signature. | 1083 | 1102 | IPR003960 | GO:0005524|GO:0016887 | |
Trre5g02361 | 1244 | FunFam | p-loop nucleoside triphosphate hydrolase superfamily protein | 938 | 1114 | - | - | |
Trre5g02361 | 1244 | SMART | AAA_5 | 976 | 1113 | IPR003593 | GO:0016887 | |
Trre5g02361 | 1244 | Gene3D | - | 1112 | 1206 | - | - | |
Trre5g02361 | 1244 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 939 | 1219 | IPR027417 | - | |
Trre5g02361 | 1244 | Gene3D | - | 139 | 248 | - | - | |
Trre5g02361 | 1244 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Trre5g02361 | 1244 | MobiDBLite | consensus disorder prediction | 539 | 588 | - | - | |
Trre5g02361 | 1244 | Pfam | ATPase family associated with various cellular activities (AAA) | 980 | 1109 | IPR003959 | GO:0005524|GO:0016887 | |
Trre5g02361 | 1244 | Pfam | FHA domain | 161 | 230 | IPR000253 | GO:0005515 | |
Trre5g02361 | 1244 | Coils | Coil | 900 | 920 | - | - | |
Trre5g02361 | 1244 | Gene3D | - | 938 | 1219 | IPR027417 | - | |
Trre5g02361 | 1244 | PANTHER | AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED | 423 | 1243 | - | - | |
Trre5g02361 | 1244 | CDD | RecA-like_ATAD1 | 943 | 1109 | - | - | |
Trre5g02361 | 1244 | MobiDBLite | consensus disorder prediction | 539 | 571 | - | - | |
Trre5g02361 | 1244 | MobiDBLite | consensus disorder prediction | 324 | 361 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre5g02361 | Trre-Chr5 | 18080344 | 18092355 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre5g02361 | 939 | 1187 | Calmodulin-binding Proteins | AT3G56690 | 40.625 | 1.21e-42 | 167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre5g02361 | - | - | tpra:123897002 | 2270.35 |