Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02361 ATGGTTTCAACGAGACGCAACAGTGGTGGATCTTTCCCTTCTTCTAACAATAACAACAACAATAACTCTAAAAGACCTTCGTCATCTTCCGATGACAAACCTCCTTCTTCTCCTTCTCCTAAGCGTCAAAAGTCTGACAATGGTGCTACTGCTGCTGCTGCTGCTGAGAAACCGATTTCTCCGGCGGAGAATTCCAAGGATTTGTCTACTCCTGACCCTCCCGCCGATCCCGGAGAATGTCGTAACGCTGATGCTCAGATCGATGAACCGGCAGTAGCTGCTGATGATAAAACCGATGCTACTCCGCCGATCGCTGACGGTTCTTCGCCGACTCTGGTAGCCGATAAACCTAGGGCTTCGTTTTCTTCATGGAGTATATATCAGAAGCAAAACCCGAACCTTGAGTCTTCAGCTCCATGGTGTCGGCTTCTGTCTCAGTCTGCACAGCATCCAAATGTTTCAATTTGCACACCCAATTTTACTATTGGCTCTAGCAGAAATTGCAACTTTCATTTGAAGGATCATACTATAAGTGGAAATTTATGCAAGATCAAACATACACAGCGCGAGGGACTTGATGCGGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTTAATGGGACACTTGTCAAGAAGAATAACTGCTGCACGCTTCTCTCGGGCGATGAGGTGGTTTTTGGCTTGCATGGAAATCATTCTTATATTTTTCAGCAAGTAAACACCGAGGTTGCGGTTAAGGGTGTAGAAGTTCAGAGTGGTGTTGGTAAATTTATGCAACTTGAAAGGAGAAGTGGAGACCCTTCAGCCGTGGCTGGGGCTTCTATCTTAGCTTCTCTTTCTAATCTCAGGCAGGATCTTACAAGATGGAAGTCTCCATCTCAGACTGCCAGTAAGCCTCACCAGGCTGCTGATGTTTCTATTCATACTGTTCTACCTGATGGCACAGAAATTGAGCTTGATGGCCTGGAAGGAAACTCAACTCCAAATATTGGAACTGATAAAGCTGCTGACGCGGAGGCTAGCAACAAGAACTCTCCTATGGAATGCGATCCAGAGGATGCGGGCGCAGAGCCAGGCAATGTAAAATTCTCTGGGGTGAATGATTTGCTAAGGCCTTTCTTCAGGATTCTAGCTGGATCTACTACTTGTAAACTGAAATTGAGCCAAAGTATCTGTAAACAGGTATTGGAAGAAAGAAATGGGGAGGAGGACACACAAGCTGCATCGACTTCGGGTACATCTGTACGCTGTGCAGTTTTTAAAGAAGATGCTCATGCTGCAATACTGGATGAAAAAGAACTAGAAGTGTCCTTTGACAACTTCCCATACTATTTAAGTGAGAATACAAAAAATGTCCTGATTGCAGCTTGCTTTATACACCTGAAGCATAAAGAACATGCAAAGTACACCACAGATCTTACCACCGTAAATCCTCGTATTCTACTTTCAGGACCCGCAGGGTCAGAAATATATCAGGAGATGCTTGTAAAAGCACTTGCAAAATACTTTGGTGCTAAATTGCTCATATTTGATAGCCAGTCGCTCTTGGGTGGTTTATCTTCTAAGGAAGCTGAACTGCTCAAAGATGGATTTAATGCTGAGAAATCTTGCAGTCCTACAGCCACAGACACGACTAAGAGCATGGATCCACCAGCTAGTGAAACGGATACACCTAGCACTTCAAATGCACCTACTCCACTTGGCCTTGAACCTCAAACTAAGTTGGAAAATGATAGTGTACCGTCAACGTCTGGGACATCTAAAAATTGCTTGTTTAAACTGGGCGACCGGGTTAAGTATAGTTCATCTTCTGGTTGTTTGTATCAGACATCTTCTTCAAGGGGTCCATCTAATGGAAGTCGAGGGAAGGTTGTCTTAATTTTCGATGATAATCCATTGTCAAAAATTGGTGTAAGATTTGATAAACCTATACCTGATGGGGTTGATCTTGGAGGTGCCTGTGAGGGGGGTCAGGGATTTTTCTGCAACGTCACTGATCTTCGATTGGAAAACAGTGGCATTGACGAACTCGACAAATTACTTATTAATACGTTGTTTGAGGTTGTAACTAGTGAGAGTAGAAATTCACCTTTCATTTTGTTCATGAAAGAAGCAGAAAAGGCTATAGTAGGAAATGGAGATCCATATTCATTTAAAATGAAGCTTGAAATGCTTCCTGACAATGTGGTGGTAATAGGTTCACACACTAACACCGACAGTCGAAAGGAGAAGTCACATCCCGGGGGTTTGCTTTTTACAAAATTTGGCAGCAATCAGACTGCCCTCCTTGACTTGGCTTTCCCGGATAGTTTCGGAAGATTGCATGATAGGGGAAAAGAAGTCCCAAAACCAAACAAAACTTTGACCAAGTTATTTCCAAATAAAGTAACAATTCACATGCCACAGGATGAGGCACTTCTAGCATCATGGAAACAACAACTTGATCGAGATGTGGAGACTCTTAAAGTCAAAGGAAATTTGCACCATTTGCGCACCGTTTTAAGCCGTAGTGGGATGGAATGTGAAGGACTCGAGGGCTTGTGTGTCAAGGATCTGACACTTACAAATGAAAATTCAGAGAAGATTGTTGGTTGGGCTTTAAGCCACCATCTGATGCAGAATTCTGAAGTTGACGCTGATGCAAAGCTTGTGTTGTCTTGTGAGAGCCTCCAGTATGGAATTGGGATCTTACAAGCTATCCAGAATGAGTCGAAGAGCCTAAAAAAGTCTCTTAAGGATGTTGTAACAGAAAACGAGTTTGAAAAGAGGCTTTTGGGCGATGTTATTCCACCTAGCGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTTAAGGATACATTGAAGGAATTGGTGATGCTTCCTTTACAGAGGCCAGAGCTTTTTTGCAAGGGGCAGTTAACCAAGCCATGCAAGGGCATTCTTTTATTTGGTCCACCGGGAACAGGCAAGACAATGCTTGCCAAGGCAGTTGCCACCGACGCTGGTGCAAACTTCATCAATATTTCCATGTCAAGCATCACATCTAAGTGGTTTGGTGAGGGTGAAAAATATGTCAAAGCTGTTTTCTCCCTGGCAAGTAAAATTGCTCCCAGTGTGATATTTGTTGATGAAGTTGATAGTATGTTGGGCCGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAACTGGGATGGCTTACGTACAAAGGATACTGAACGTGTTCTTGTGCTCGCAGCCACCAATAGACCTTATGACCTTGATGAGGCTGTCATACGAAGGCTGCCTCGGAGATTAATGGTAAATTTACCAGATGCTCCAAATAGAGCAAAAATATTGAAAGTTATACTGGCAAAAGAGGACCTGTCTTCTGATGTTGATCTGAGTGCAGTTGCAAGTATGACTGACGGATATTCTGGAAGTGATCTTAAGAACTTATGTGTAACCGCTGCACACCGTCCTATTAAAGAGATACTAGAAAAGGAAAAAAAGGAACTTGCTGCTGCTCTAGCAGAAGGTAGACCTGCACCTGCATTACGTGGAAGTGATGATATCCGATCTTTAAACATGGAAGACTTTAAACATGCTCACCAACAGGTATGTGCAAGTGTTTCCTCTGAATCCGTAAATATGACAGAGCTTGTACAATGGAATGAACTCTATGGTGAAGGTGGTTCAAGAGTTAAGAAAGCACTAAGCTATTTCATGTGA 3735 0.4321 MVSTRRNSGGSFPSSNNNNNNNSKRPSSSSDDKPPSSPSPKRQKSDNGATAAAAAEKPISPAENSKDLSTPDPPADPGECRNADAQIDEPAVAADDKTDATPPIADGSSPTLVADKPRASFSSWSIYQKQNPNLESSAPWCRLLSQSAQHPNVSICTPNFTIGSSRNCNFHLKDHTISGNLCKIKHTQREGLDAAVLESTGSKGSVLVNGTLVKKNNCCTLLSGDEVVFGLHGNHSYIFQQVNTEVAVKGVEVQSGVGKFMQLERRSGDPSAVAGASILASLSNLRQDLTRWKSPSQTASKPHQAADVSIHTVLPDGTEIELDGLEGNSTPNIGTDKAADAEASNKNSPMECDPEDAGAEPGNVKFSGVNDLLRPFFRILAGSTTCKLKLSQSICKQVLEERNGEEDTQAASTSGTSVRCAVFKEDAHAAILDEKELEVSFDNFPYYLSENTKNVLIAACFIHLKHKEHAKYTTDLTTVNPRILLSGPAGSEIYQEMLVKALAKYFGAKLLIFDSQSLLGGLSSKEAELLKDGFNAEKSCSPTATDTTKSMDPPASETDTPSTSNAPTPLGLEPQTKLENDSVPSTSGTSKNCLFKLGDRVKYSSSSGCLYQTSSSRGPSNGSRGKVVLIFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLENSGIDELDKLLINTLFEVVTSESRNSPFILFMKEAEKAIVGNGDPYSFKMKLEMLPDNVVVIGSHTNTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVTIHMPQDEALLASWKQQLDRDVETLKVKGNLHHLRTVLSRSGMECEGLEGLCVKDLTLTNENSEKIVGWALSHHLMQNSEVDADAKLVLSCESLQYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLGDVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATDAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPYDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSSDVDLSAVASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKELAAALAEGRPAPALRGSDDIRSLNMEDFKHAHQQVCASVSSESVNMTELVQWNELYGEGGSRVKKALSYFM 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02361 1244 Pfam AAA+ lid domain 1133 1168 IPR041569 -
Trre5g02361 1244 SUPERFAMILY SMAD/FHA domain 120 240 IPR008984 GO:0005515
Trre5g02361 1244 MobiDBLite consensus disorder prediction 1 116 - -
Trre5g02361 1244 ProSitePatterns AAA-protein family signature. 1083 1102 IPR003960 GO:0005524|GO:0016887
Trre5g02361 1244 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 938 1114 - -
Trre5g02361 1244 SMART AAA_5 976 1113 IPR003593 GO:0016887
Trre5g02361 1244 Gene3D - 1112 1206 - -
Trre5g02361 1244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 939 1219 IPR027417 -
Trre5g02361 1244 Gene3D - 139 248 - -
Trre5g02361 1244 MobiDBLite consensus disorder prediction 1 46 - -
Trre5g02361 1244 MobiDBLite consensus disorder prediction 539 588 - -
Trre5g02361 1244 Pfam ATPase family associated with various cellular activities (AAA) 980 1109 IPR003959 GO:0005524|GO:0016887
Trre5g02361 1244 Pfam FHA domain 161 230 IPR000253 GO:0005515
Trre5g02361 1244 Coils Coil 900 920 - -
Trre5g02361 1244 Gene3D - 938 1219 IPR027417 -
Trre5g02361 1244 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 423 1243 - -
Trre5g02361 1244 CDD RecA-like_ATAD1 943 1109 - -
Trre5g02361 1244 MobiDBLite consensus disorder prediction 539 571 - -
Trre5g02361 1244 MobiDBLite consensus disorder prediction 324 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02361 Trre-Chr5 18080344 18092355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02361 939 1187 Calmodulin-binding Proteins AT3G56690 40.625 1.21e-42 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02361 - - tpra:123897002 2270.35